1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCAAAGTAGAAGTATAATTGTGCACTCTGAAATGGAAGGCTTTAAACTTGCTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGgttaggactattaattttctttcctagttttctccctgatgatgatgaaatatgaacacattttgaaattttgaagttttagagttacatgctttataac...
species | Glycine max |
transcript | GLYMA15G10620.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGG GGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACEST: gi|22931818|gb|BU548957.1|BU548957
genomic: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCA-Ggttaggacta ... tgtttttcagGGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAAC
EST: NNCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAG GGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACTEST: gi|254326930|gb|GR836539.1|GR836539
genomic: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGgttaggacta ... tgtttttcagGGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACT
EST: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAG GGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACTEST: gi|151402884|gb|EV272697.1|EV272697
genomic: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGgttaggacta ... tgtttttcagGGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACT
EST: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAG GGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACTEST: gi|10846309|gb|BF069227.1|BF069227
genomic: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGgttaggacta ... tgtttttcagGGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACT
EST: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAG GGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACTEST: gi|7285022|gb|AW597509.1|AW597509
genomic: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGgttaggacta ... tgtttttcagGGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACT
EST: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAG GGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACT
genomic: CTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGgttaggacta ... tgtttttcagGGTATCCTGTCGAGAACAGATGAGAAGTGGGGAGTACTGAAAAGTCCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAAGTAGAAGTATAATTGTGCACTCTGAAATGGAAGGCTTTAAACTTGCTCAGGGCTGCTCCCAAGATAACATGCTATCAGTTGCAATTAACAGCCAGgttaggactattaattttctttcctagttttctccctgatgatgatgaaatatgaacacattttgaaattttgaagttttagagttacatgctttataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctccc