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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAATATTGTTTGGAGGAGAAGATGCAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAATCCTTGACATGGCTTCCTCTCCACTGCACgtaattgtgtttacgctttgttgtggttgattacttctgtttttaaagttcaaaaacaaaagttttgacttgcatgtttttaaggacctgatttaaatgtttccttgcttttgaaatgtaatgctgtgttctttttttttttttaccccatactacctcctaaaatattatatcacttgcag

Basic information

species Glycine max
transcript GLYMA15G10310.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G070553_T01 (Zea mays), 5'ss of exon 9
TTTTAATATTGTTTGGAGGAGAAGATGCAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAATCCTTGACATGGCTTCCTCTCCACTGCACgtaattgtgtttacgctt---tgttgtggttgattacttctgtttttaaagttcaaaaacaaaagttttgacttgcatgtttttaaggacctgatttaaatgtttccttgcttttgaaatgtaatgctgtgttctttttttttttttaccccatactacctcctaaaatattatatcacttgcag
|||||||  | |||||||| |||||||| ||| ||| ||||||  |||| || |||||||||||||| || || || ||||||||||||||  |||  | ||||     | ||  ||    |     | | |  || |    ||  |||||    |||| |||   |      |   |  |||        | |||| |                                                                                      
TTTTAATTCTCTTTGGAGGTGAAGATGCCAAAGGGAAGAAACTACATGACCTTCATATGTTTGATCTGAAGTCATTAACATGGCTTCCTCTGAACTATAAgtaagctattctagtctagaattcaacgatagtgtaatatcattactaaagaaagaaaagaaagcatggaggctaattagtttcctcttggtcatttcac-------------------------------------------------------------------------------------

upper sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G18590.1 (Arabidopsis thaliana), 5'ss of exon 9
TTTTAATATTGTTTGGAGGAGAAGATGCAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAATCCTTGACATGGCTTCCTCTCCACTGCACgtaattgtgtttacgctttgttgtggtt--gattacttctgtttttaaagttcaaaaacaaaagttttgacttgcatgtttttaaggacctgatttaaatgtttccttgcttttgaaatgtaatgctgtgttctttttttttttttaccccatactacctcctaaaatattatatcacttgcag
| || ||| | || || || |||||  | || | ||||||||| || ||||| |||||||||||||||||||| |  ||||||||||||||  | ||||||| |  || |||||  |||    |  ||  ||| | |  |    || || | | |      |  | ||||   |  | || | |   |    |                                                                                           
TATTGATACTATTCGGTGGTGAAGACTCTAAGAAGAGGAAACTAAACGATCTTCATATGTTTGATCTCAAATCATCCACATGGCTTCCTCTTAATTGCACgtga--gtttttactttttaacatttttctgatgattgtttacattgaactcctacttgtgatttcttgatacggttcttctcattaaaaaaacag----------------------------------------------------------------------------------------

upper sequence: GLYMA15G10310.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 5'ss of exon 9
TTTTAATATTGTTTGGAGGAGAAGATGCAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAATCCTTGACATGGCTTCCTCTCCACTGCACgtaattgtgtttacgctttgttgtggttgattacttctgtttttaaagttcaaaaacaaaagttttgacttgcatgtttttaaggacctgatttaaatgtttccttgcttttgaaatgtaatgctgtgttctttttttttttttaccccatactacctcctaaaatattatatcacttgcag
| |||||  | ||||| || |||||| | ||||| |||||||| ||||||||||||||||||||||| || || ||||||||||| ||||| || ||||||||| || |||| |  |    |||  ||||  | ||||   |   |  || ||| |      |||  |||   || |||| ||     |   || | | | | |    | |    ||| | |  | | |    |||    || |      |||                             
TCTTAATCCTATTTGGGGGTGAAGATTCTAAAAGAAGGAAACTCAATGATCTACATATGTTTGATCTAAAGTCTTTGACATGGCTCCCTCTTCATTGCACgtaagtgggttt-cagtcaactgta-ttga--atttctcactaatatctttaaatattgtc-tttctactaaaatattttgaattttttttctttattatatgccatatctccttatgaactattatctaagatttggggttatgtat-gtacag---------------------------