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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAGgtacacatatttgaatcaaacctcatcttttttctaaatctctatttttggcttggaagttcactgggaatttgaacctggttagaattttttggttaca...

Basic information

species Glycine max
transcript GLYMA15G10030.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10030.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G46210.1 (Arabidopsis thaliana), 5'ss of exon 9
TTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAGgtacacatatttgaatcaaacctcatcttttttctaaatctctatttttggcttggaagttcactgggaatttgaacctggttagaattt-tttggttaca-------
 | ||||| ||||| || |||||||| |||||||| || ||||||||||| ||||||  | |  ||        |||  ||| | ||| |||    | ||  | | ||  |  || |||  | |    ||| |  | |   | | ||| |||||        
CTTAAGACTGAGTGTGGTAGCCAGTTTACAAACAAGCTCGAAGGGATGTTCAAGgtatcctttcttct------ccttctctatattcaaaaaagatgttggtcgttta-agttttactaaggaac-aaacttaatgatcttatattttgttacgttttacg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404598|gb|EV274412.1|EV274412
EST:     AGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAG                         GACATTGAATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAG
genomic: AGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAGgtacacatat ... cctaattcagGACATTGAATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAG
EST: gi|7028742|gb|AW458525.1|AW458525
EST:     AAACAAACTAGAAGGGATGTTTAAG                         GACATTGAATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAG
genomic: AAACAAACTAGAAGGGATGTTTAAGgtacacatat ... cctaattcagGACATTGAATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAG
EST: gi|151395410|gb|EV265287.1|EV265287
EST:     AGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAG                         GACATTGAATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAG
genomic: AGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAGgtacacatat ... cctaattcagGACATTGAATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAG