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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGgtaaggattttaatttcccacgactttcttgctatttttcgatatgcacacttttttttctcattatagtttctttatgatttatgtaggatgatttacc...

Basic information

species Glycine max
transcript GLYMA15G07970.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07970.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 5'ss of exon 9
CTAAAATTATTTTTCCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGgtaaggatt--ttaatttcccacgactttcttgctatttttcgatatgcacacttttttttctcattatagtttctttatgatttatgtaggatgatttacc
|| |||||||| |||||| |||| || || |||||||| ||||||||||||||||||||||||||||||  |    |  ||||               |  || |   |        | || ||| | ||| || ||||    |     ||||    |||||    
CTGAAATTATTCTTCCCTATAGTAACTTTTGCAAAACCGAAAAGCAGCCGTAATTCCAGCATAGgtaagagtgagctcctttcttttagtagctgaattgcttattagttcttctcatgttatttataattgtattttcgaagtctcccatgtcccctgattag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193636813|gb|FK580840.1|FK580840
EST:     CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG                         AGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAA
genomic: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGgtaaggattt ... gcccttgcagAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAA
EST: gi|7926380|gb|AW832406.1|AW832406
EST:     CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG                         AGGCATTTGCAGTTTGTGAAAACTAT
genomic: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGgtaaggattt ... gcccttgcagAGGCATTTGCAGTTTGTGAAAACTAT
EST: gi|151397919|gb|EV267792.1|EV267792
EST:     CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG                         AGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAA
genomic: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGgtaaggattt ... gcccttgcagAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAA
EST: gi|151411265|gb|EV281076.1|EV281076
EST:     CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAG                         AG-CATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAAGATTCAATCCAA
genomic: CCCTGTAGTGACGTTCGCAAAACCAAAAAGCAGCCGTAATTCCAGCATAGgtaaggattt ... gcccttgcagAGGCATTTGCAGTTTGTGAAAACTATTCCCCTCCTGAAGGATTCAATCCAA