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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgactgttccgcttttatgcatatgagctttgcttcatattcaaacaaaatttactaatcatgattcactttgtgcttgcag

Basic information

species Glycine max
transcript GLYMA15G07480.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07480.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 5'ss of exon 8
GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgactgttccgcttttatgcatatgagctttgcttcatattcaaacaaaatttactaat-----catgattcactttgtgcttgcag---------------------------------------
|||||| ||||||||||| ||||||||||||||| |||||||| ||||||   |||  || |  | |  |   | | || ||    | ||  |   | || ||| |    |     ||  |||   |      ||||||                                       
GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaa---gacccttaccttctggtaactgtaaggttaaaatgat-ctagtataagattaatggtttgccacactattggttgcaaaattgcagatattccgtgcagtgctaacagtgtttgccccctttcag

upper sequence: GLYMA15G07480.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 8
GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgactgttccgcttttatgcatatgagctttgcttcatattcaaacaaaatttactaatcatgattcactttgtgcttgcag---------------------------------
 ||||| ||||||||||| ||||| ||||||||  |||||||||||||||| | |   |      |  | |  | | ||   |   | |   | |||  | ||   | || |||||   | ||  |   | |                                   
AACTGAGAGTGCTTTGAAGTTTGGGTGGTTTTTTCTGTTTTACCTGgtaaaataa---tctaaactaaaggtttttcagtcatatcttagcattaaattagatgagccaagcatgaacaaattcatctgtacttcatagctaactaacaatctttgtccatttccag

upper sequence: GLYMA15G07480.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 9
GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgactgttccgcttttatgcatatgagctttgcttcatattcaaaca---aaatttactaatcatgattcactttgtgcttgcag
|||||| ||||| ||||| ||||||| ||| |||||| |||||||||||| |     || |   || ||||    | || | | |      ||  ||           |  | || ||| |  | | ||  ||||||
GACTGATAGTGCCTTGAAGTTTGGATTGTTCTTCTTGGTTTACCTGgtaagtgaggagtccttgttatatgttagtaagatattcggtgattttgaatgtgtgggaacataattcttgaatttcct-gtctttgcag

upper sequence: GLYMA15G07480.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G169773_T02 (Zea mays), 5'ss of exon 8
GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgactgttccgcttttatgcatatgagctttgcttcatattcaaacaaaatttactaatcatgattcactttgtgcttgcag
|||||| ||||||||||| ||||| |||||||||||||||||||| ||||  | |   |  |    |     | |  |  | |  ||||    |    ||   |   ||  | |  | ||              
GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTTgtaagattatcatcacttcatatattagaaaaaatatatttcactccctgctaatgatctttacccct--tccag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994675|gb|BQ786203.1|BQ786203
EST:     GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTG                         CTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTC
genomic: GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgac ... gtgcttgcagCTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTC
EST: gi|10255229|gb|BE822995.1|BE822995
EST:     GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTG                         CTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTC
genomic: GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgac ... gtgcttgcagCTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTC
EST: gi|16343904|gb|BI969499.1|BI969499
EST:     GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTG                         CTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTC
genomic: GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgac ... gtgcttgcagCTTCACCTAGGATTCTGTATCTTAGCTGCAGTTGCTCCTCCCATAGTTTTC