Sequence
atgc intronic sequence ATGC exonic sequenceTGTGGCGTGCTTATGATGTCCTTGTTTGTATTTTTTACTACCACAATGTCAGTATCATTTACATTAAGAGAAACACAGACTCGCATGCTGAAGTTCACGGgtaggaattgtttgttcattatacagaggtttcatcatgtgaaaactgatttggtgattcctgctcgcttgcatctatcctgttattttgtccattgccc...
Basic information
species | Glycine max |
transcript | GLYMA15G05080.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G60995.1 (Arabidopsis thaliana), 5'ss of exon 10
TGTGGCGTGCTTATGATGTCCTTGTTTGTATTTTTTACTACCACAATGTCAGTATCATTTACATTAAGAGAAACACAGACTCGCATGCTGAAGTTCACGGgtaggaattgtttgttcattatacagaggtttcatcatgtgaaaactgatttggtgattcctgctcgcttgcatctatcctgttattttgtccattgccc
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TGTGGTGTCCTAATGATGTCACTTTTTGTGTTTTTCACAACCACAATGTCTGTATCATTCACATTGCGAGAGACACAAACTCGCATGTTGAAGTTTACAGgttagaatttctt-----ctattccaatagcttatggtttccaatctttgcttctcaacaatcatc-tttgtttcgatatcactttgttgcag-------
upper sequence: GLYMA15G05080.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0034g02140.t01 (Vitis vinifera), 5'ss of exon 9
TGTGGCGTGCTTATGATGTCCTTGTTTGTATTTTTTACTACCACAATGTCAGTATCATTTACATTAAGAGAAACACAGACTCGCATGCTGAAGTTCACGGgtaggaattgttt-gttcattatacagaggtttcatcatgtgaaaactgatttggtgattcctgctcgcttgcatctatcctgttattttgtccattgccc---
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TGTGGTGTGCTTATGATGTCGCTATTTGTTTTCTTCACAACCACAATGTCGGTTTCATTTACATTAAGAGAGACACAAACCCGCATGCTAAAGTTTACAGgtttgctttatttcattttcaatttaggacatgtaccgtggtgcaagcaacataa-aatgtatgcatccgt---taaatactatttttgagtatatgggtgatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213617765|gb|DB959377.1|DB959377EST: AGTATCATTTACATTAAGAGAAACACAGACTCGCATGCTGAAGTTCACGG TGCAGCTTCAACACCATGCACGGCATCGCCTTCCAACATTTCAGCTGATCT
genomic: AGTATCATTTACATTAAGAGAAACACAGACTCGCATGCTGAAGTTCACGGgtaggaattg ... gtctttacagTGCAGCTTCAACACCATGCACGGCATCGCCTTCCAACATTTCAGCTGATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTGGCGTGCTTATGATGTCCTTGTTTGTATTTTTTACTACCACAATGTCAGTATCATTTACATTAAGAGAAACACAGACTCGCATGCTGAAGTTCACGGgtaggaattgtttgttcattatacagaggtttcatcatgtgaaaactgatttggtgattcctgctcgcttgcatctatcctgttattttgtccattgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG