1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGCCCCTAAAAAATTGTTGGCATCAGACTCTCGTTTACGTCCAGATAGATATGCACTTGAGATGGGTGATCTATCCAAATCAGGGGCAGAAAAGAGCAGgttgcttacctttactttcattccccttttgcttgaaaatatgatagttagtgcattctaaaagcaatacaaatataaaaccgagtaacagttttgcatg...
species | Glycine max |
transcript | GLYMA15G04210.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TATGCACTTGAGATGGGTGATCTATCCAAATCAGGGGCAGAAAAGAGCAG TTTGGAGGACAAGCAACGCACTGAAAAGAAAATCCGAGAAGCCAAAGAGCAEST: gi|8403502|gb|BE059136.1|BE059136
genomic: TATGCACTTGAGATGGGTGATCTATCCAAATCAGGGGCAGAAAAGAGCAGgttgcttacc ... ttcctaacagTTTGGAGGACAAGCAACGCACTGAAAAGAAAATCCGAGAAGCCAAAGAGCA
EST: TATGCACTTGAGATGGGTGATCTATCCAAATCAGGGGCAGAAAAGAGCAG TTTGGAGGACAAGCAACGCACTGAAAAGAAAATCCGAGAAGCCAAAGAGCA
genomic: TATGCACTTGAGATGGGTGATCTATCCAAATCAGGGGCAGAAAAGAGCAGgttgcttacc ... ttcctaacagTTTGGAGGACAAGCAACGCACTGAAAAGAAAATCCGAGAAGCCAAAGAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCCCTAAAAAATTGTTGGCATCAGACTCTCGTTTACGTCCAGATAGATATGCACTTGAGATGGGTGATCTATCCAAATCAGGGGCAGAAAAGAGCAGgttgcttacctttactttcattccccttttgcttgaaaatatgatagttagtgcattctaaaagcaatacaaatataaaaccgagtaacagttttgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagcaa