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AAATGTTGTGGAGAAGTGTTTGACCTTTGGAGGTCCTTCTGAACGCCAATTACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAGgtttttcttttttacctatatctccaccctccataaaaaaaaaaactcaatccccctttttttgagacaatttggtatataaagatatattgatgataat...
species | Glycine max |
transcript | GLYMA15G04060.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAG GCAATGATGAAAGATCAATTCGCCAACTATGTTGTACAAAAGGTGTTGGAGEST: gi|51342981|gb|CO983714.1|CO983714
genomic: TACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAGgtttttcttt ... ttatatgcagGCAATGATGAAAGATCAATTCGCCAACTATGTTGTACAAAAGGTGCTGGAG
EST: TACTTGTGAATGAGATGCNTNGTTCCACAGATGAAAATGAGCCTCTTCAG GCAATGATGAAAGATCAATTCGCCAACTATGTTGTACAAAAGGTGCTGGAGEST: gi|21887773|gb|BQ740986.1|BQ740986
genomic: TACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAGgtttttcttt ... ttatatgcagGCAATGATGAAAGATCAATTCGCCAACTATGTTGTACAAAAGGTGCTGGAG
EST: TACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAG GCAATGATGAAAGATCAATTCGCCAACTATGTTGEST: gi|14205439|gb|BG839117.1|BG839117
genomic: TACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAGgtttttcttt ... ttatatgcagGCAATGATGAAAGATCAATTCGCCAACTATGTTG
EST: TACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAG GCAATGATGAAAGATCAATTCGCCAACTATGTTGTACAAAAGGTGCTGGAGEST: gi|51335348|gb|CO979214.1|CO979214
genomic: TACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAGgtttttcttt ... ttatatgcagGCAATGATGAAAGATCAATTCGCCAACTATGTTGTACAAAAGGTGCTGGAG
EST: TACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAG GCAATGATGAAAGATCAATTCGCCAACTATGTTGTACAAAAGGTGCTGGAG
genomic: TACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAGgtttttcttt ... ttatatgcagGCAATGATGAAAGATCAATTCGCCAACTATGTTGTACAAAAGGTGCTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGTTGTGGAGAAGTGTTTGACCTTTGGAGGTCCTTCTGAACGCCAATTACTTGTGAATGAGATGCTTGGTTCCACAGATGAAAATGAGCCTCTTCAGgtttttcttttttacctatatctccaccctccataaaaaaaaaaactcaatccccctttttttgagacaatttggtatataaagatatattgatgataat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccccc