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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGgtgagccagcttactttggtcttttcaccaatataagttatttgaatcaaatttcatcctgtagctaatataccgatatgtagtatttgttggtccattg...

Basic information

species Glycine max
transcript GLYMA15G03200.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03200.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G30710.1 (Arabidopsis thaliana), 5'ss of exon 9
ACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGgtgagccagc-ttactttggtcttttcaccaatataagttatttgaatcaaatttcatcctgtagctaatataccgatatgtag--tatttgttggtccattg---
 || ||| ||||  |||  || || |||||||| ||||| |||||||||||||| || ||||| ||||| |||||||||| ||| || |||||  | ||||| ||| | |  |   | |    | | ||     |  ||   |||||     |||| ||    | | |  | |   | ||  |   | ||| |     || ||   
CCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGACGgtaagcaaacactgaatcga--atataacttgcgttggt--cttgaaaatgttttcttctataaaccacgagaatcaaatacaagttgtttctgtaaacaatgcag

upper sequence: GLYMA15G03200.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 9
ACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGgtgagcca-gcttact-ttggtcttttcaccaatataagttatttgaatcaaatttcatcctgtagctaata----taccgatatgtagtatttgttggtccattg
||| ||| ||||||| || || ||||||||||||||||| || || |||||||| || |||||||||||||||||||||| ||||||||||||| ||||||||||  | ||||| |  |  || ||   |   |       |    ||   ||    |   |||     |||    || | ||||| ||||     | |       
ACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAACGgtgagatatgcttaatgctcttccttatgctgtttggtaggagaaaaactgaagacaagtgtgtgttccatagctttatcaatatg-agtaaaaacttgct-----