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GTCCAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATACATACTAAGTCGTGATTACATGACTTTAAAGgtttggaattttctaatttcaaaatcaattctttctgttaaagggagaatattttgggaatgtatttttttaactactagtatttttcaattagcaagaa...
species | Glycine max |
transcript | GLYMA15G02640.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTGGGAAGGATGGAAGATACATACTAAGTCGTGATTACATGACTTTAAAG TTGTGGGACATTAATATGGATTACAAAGGCCCCGTTGCAACTTTCCAGGTTEST: gi|193343412|gb|FK308190.1|FK308190
genomic: TTGGGAAGGATGGAAGATACATACTAAGTCGTGATTACATGACTTTAAAGgtttggaatt ... gttttgtcagTTGTGGGACATTAATATGGATT-CA--GGCCCCGTTGCAACTTTCCAGGTT
EST: TTGGGAAGGATGGAAGATACATACTAAGTCGTGATTACATGACTTTAAAG TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCTAACTTTTCCTTAGGTEST: gi|11274020|gb|BF324388.1|BF324388
genomic: TTGGGAAGGATGGAAGATACATACTAAGTCGTGATTACATGACTTTAAAGgtttggaatt ... gttttgtcagTTGTGGGACATTAATATGGATTCAGGCCCCGTTGC-AAC-TTTCC--AGGT
EST: TTGGGAAGGATGGAAGATACATACTAAGTCGTGATTACATGACTTTAAAG TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCC
genomic: TTGGGAAGGATGGAAGATACATACTAAGTCGTGATTACATGACTTTAAAGgtttggaatt ... gttttgtcagTTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCAGATCATTTTTCACAGAGATTATTGCTTCTATCTCAGACATAAAATTTGGGAAGGATGGAAGATACATACTAAGTCGTGATTACATGACTTTAAAGgtttggaattttctaatttcaaaatcaattctttctgttaaagggagaatattttgggaatgtatttttttaactactagtatttttcaattagcaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA