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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGTAAGTGGCACTGTTTGCAATTCTTCAAATTTGAATGCTGAAGATCAACTGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTCAGAgtatgtgaaaaccggagatgtctttcttaccttgggtatattgtagtagtgctaagtttagttgctgattctttcacaatttaccccaatccttaagcttcatatacatttgttgttggtaaggtgctcataaaatcatagctgatatatctgacatataacatactcag

Basic information

species Glycine max
transcript GLYMA15G00590.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00590.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 10
TTCTGTAAGTGGCACTGTTTGCAATTCTTCAAATTTGAATGCTGAAGATCAACTGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTCAGAgtatgtg---aaaaccggagatgtctttcttaccttgggtatattgtagtagtgctaagtttagttgct-----gattctttcacaatttaccccaatccttaag-cttcatatacatttgttgttggtaaggtgctca-----taaaatcatagctgatatatctgacatataa-catactcag
 | |||||| ||  | ||||||| ||| |||||||||||    || |||||   ||| ||  | |||||||| |||||||||||||| ||  ||||||||||||||      |   | ||     |         | | |||  |     | |      ||||| | ||     |||| |   | |||  |   |||  |   |  |||  |||   ||||   ||  |   |  | ||       | ||  |   ||||||   | |  | | | |||   |||
ATGTGTAAGCGGTGCAGTTTGCAGTTCCTCAAATTTGAACCTGGATGATCAGGAGAGTTGCAAAGATTTGGACCTGAACAAAGCCTCATTTTTACTCAGAgtatgtctctgtagttgtagcaacatgggcatttattgttatcatccttcaatctctcatttagcttctaaccagattgtgctaaaatccatttcaaatcaggattcttggtatggttttgccttttcttctgaacccaactgtccagatttttcatgatattgttaatttgttatcatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27446002|gb|CA953125.1|CA953125
EST:     AACTGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTCAGA                         AATGTCTTGGGGAAATGGAGCTCAAAACTATTTGGAATTGCTTTGCTTGCA
genomic: AACTGAGCTGTCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTCAGAgtatgtgaaa ... acatactcagAATGTCTTGGGGAAATGGAGCTCAAAACTATTTGGAATTGCTTTGCTTGCA
EST: gi|7925526|gb|AW831552.1|AW831552
EST:     TCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTCATA                         AATGTCTTGAGGAAATGGAGCTCAAAACTATTTGGAATTGCTTTGCTTGCA
genomic: TCAGGATTTGGATCTGAACAAAGCCTCCTTCCTACTCAGAgtatgtgaaa ... acatactcagAATGTCTTGGGGAAATGGAGCTCAAAACTATTTGGAATTGCTTTGCTTGCA