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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGATGGTGCATGGGAAAAGAAATGGACTTAAATTTTCAACTATTTGAGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatttcttgcccctataaatggtgttggtagcagttattaatgtttttcaacttataaacaatcaatggtcagaagctagttctcttttaagat...

Basic information

species Glycine max
transcript GLYMA15G00380.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00380.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G053004_T03 (Zea mays), 5'ss of exon 9
TGTTGGATGGTGCATGGGAAAAGAAATGGACTTAAATTTTCAACTATTTGAGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgtt--------------atttcttgcccctataaatggtgttggtagcagttattaatgtttttcaacttataaacaatcaatggtcagaagctagttctcttttaagat------------
  |||| |||   |||||| ||||||||||||| ||||||||||| || ||||| || || || ||||| |||||  |||| || ||||| ||| | |||||||| |              |  || |   |   |      |||   |   ||||| ||            || ||  | ||   | ||   ||  |  |  | || | | ||            
AATTGGCTGGATGATGGGACAAGAAATGGACTTGAATTTTCAACTGTTCGAGACAGCGACTCTCTTTATAACTGTACTAGTGGTGGCATTCATGCTACAGgtatgcttacagaacaaagcaacatcctattctattttcctctgtatatga-agttacta-cacgggctgttttgtagcctatttttagttctaatgttttcattttattatatatgtttttccag

upper sequence: GLYMA15G00380.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0018g01840.t01 (Vitis vinifera), 5'ss of exon 10
TGTTGGATGGTGCATGGGAAAAGAAATGGACTTAAATTTTCAACTATTTGAGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttat----ttcttgcccctataaatggtgttggtagcagttattaatgtttttcaacttataaacaatcaatggtcagaagctagttctcttttaagat
|||||| |||   |||||| ||  ||||||||| ||||||||||| |||||||||||||| || |||||| | ||| ||||||| ||||||||| ||||||| ||||||    ||| |           | || |||||    || | | |    | |  ||  |||     | |||  |      |||| |||  |  |  ||
TGTTGGTTGGATTATGGGACAACCAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACTCTCTTTATCGCGGTGCTAGTAGTGGCATTTATGTTGCAGgtttgttatcaagttcctcatttcccttttagttttggttttggtcaatcaccgatatggacacatatcttgttaatttt----gtctaggtcttgtgcatcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8825719|gb|BE209385.1|BE209385
EST:     AGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAG                         GAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATACTATGCTATCTA
genomic: AGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatt ... ttccttgcagGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATACTATGCTATCTA
EST: gi|209715668|gb|BW674354.1|BW674354
EST:     AGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAG                         GAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATACTATGCTATCTA
genomic: AGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatt ... ttccttgcagGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATACTATGCTATCTA
EST: gi|208047251|gb|GD844348.1|GD844348
EST:     AGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAG                         GAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATACTATGCTATCTA
genomic: AGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatt ... ttccttgcagGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATACTATGCTATCTA
EST: gi|13481337|gb|BG510680.1|BG510680
EST:     AGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATAATGCAG                         GAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATACTATGCTATCTA
genomic: AGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatt ... ttccttgcagGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATACTATGCTATCTA
EST: gi|21887557|gb|BQ740770.1|BQ740770
EST:     AGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAG                         GAAAGAACCTCAAATTATTTTAGAGGGTTGATGCTTATACTATGCTATCTA
genomic: AGACTGCCACACTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatt ... ttccttgcagGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATACTATGCTATCTA