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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGAGTTCATGGAAGGGAAACCAGATCTAGTTATTGGAAATTACACTGATGGAAATTTGGTAGCATCACTAATGGCTAGAAAACTTGGGATAACTCAGgtcactataagtttttttaagttttcctttcaactgtttttgtggctgcaagtatatgtgtgtttttgctacgtgtactaattccatatggtaatttaaaaccag

Basic information

species Glycine max
transcript GLYMA14G39070.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G39070.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0079g00230.t01 (Vitis vinifera), 5'ss of exon 8
TCTTGAGTTCATGGAAGGGAAACCAGATCTAGTTATTGGAAATTACACTGATGGAAATTTGGTAGCATCACTAATGGCTAGAAAACTTGGGATAACTCAGgtcactataagtttttttaagttttcctttcaactgtttttgtggctgcaagtatatgtgtgtttttgctacgtg--tactaattccatatggtaatttaaaaccag
  |||||  |||||||||||||||||| ||  | |||||||| ||||||||||| |||||||| ||||| || |||||||  ||||||||||||||||||||           ||||||    ||  |   |  |  ||| |   ||  |  || |  ||| || ||||||  |   |||||||   | |||      | |||| ||
CATTGAGCACATGGAAGGGAAACCAGACCTTATCATTGGAAACTACACTGATGGGAATTTGGTGGCATCTCTCATGGCTACTAAACTTGGGATAACTCAGgtg----------tttttactcattagtggtagatagttt-gctactaaatataaac-tgtcttcttgctagctacttactaatctaaaatgcc---ctgaaactag