Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGAAGTTTGGAGAAGAGGGGAACAAATATTTCCGACATGCAACTGGGCAGATATATGCAATCTCTAAGGATCTAGCCACCTACATTTCCATTAACCAgtatggatacagttttccatgcactactaagtcatctataattgagaccagaggagctaatcttgaccatacaactatattgcatgaatagatttaagta...

Basic information

species Glycine max
transcript GLYMA14G33700.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os09g27950.1 (Oryza sativa), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATATTTCCGACATGCAACTGGGCAGATATATGCAATCTCTAAGGATCTAGCCACCTACATTTCCATTAACCAgtatggatacagttttccatgcactactaagtcatctataattgagaccagaggagctaatcttgacc-atacaactatattgcatgaatagatttaagta
| ||||||||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||| || ||||| ||||| || || |||| ||| |  || ||  |  | |||||   | | || ||    |       ||    |   |||  | ||  ||||   | | |  ||  |    |   |    
TCTGGAAGTTTGGCGAAGACGGGAACAAGTATTTCCGCCATGCCACTGGGCAGATATATGCCATCTCAAAGGACCTTGCCACATACATCTCGATCAACCGgtaagcctagagaatggc-tgcaca--tgattcttcagacaaaatattcattttactgaattgttactgatactcttgtgtcccaccatataacccag---

upper sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g35870.1 (Oryza sativa), 5'ss of exon 9
TTTGGAAGTTTGGAGAAGAGGGGAACAAATATTTCCGACATGCAACTGGGCAGATATATGCAATCTCTAAGGATCTAGCCACCTACATTTCCATTAACCAgtatggatacagttttccatgcactactaagtcatctataattgagaccagaggagctaatcttgaccatacaactatattgcatgaatagatttaagta
  ||||| ||||| || || ||||||||||| ||||| ||||| |||||||||||||| || || || || || || || ||||||||||| || ||||||||||  | |  | | ||||||  | | || || | ||| |  || |    |    ||||| ||     | |||  || ||   | |             
ACTGGAAATTTGGGGAGGAAGGGAACAAATACTTCCGTCATGCTACTGGGCAGATATACGCGATTTCAAAAGACCTCGCGACCTACATTTCAATCAACCAgtatgtttcc--tatgccatgccatgcaaaatcct-tatgaccgaaa----aaatactaatgtt-----tccaatgatgttttgtcag------------

upper sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G133613_T02 (Zea mays), 5'ss of exon 8
TTTGGAAGTTTGGAGAAGAGGGGAACAAATATTTCCGACATGCAACTGGGCAGATATATGCAATCTCTAAGGATCTAGCCACCTACATTTCCATTAACCAgtatggatacagttttccatgcactactaagtcatctataattgagaccagagg--agctaatcttgaccatacaactatattgcatgaatagatttaagta
| |||||||| ||||| || |||||||| || ||||| || || || ||||||||||| || ||||| ||||| || || |||||||| ||||| ||||||||  || | |   |||  |   || ||      ||| | | ||  ||  |  |  |||| |||   |       || ||||  ||                
TCTGGAAGTTCGGAGAGGACGGGAACAAGTACTTCCGCCACGCCACGGGGCAGATATACGCCATCTCCAAGGACCTCGCGACCTACATCTCCATCAACCAgta-agacaaaaccttct-tcttcttcttctctctct-tgagtggcactggcaggcagctgatccatatgcgttcaccatataccaccgcccag--------

upper sequence: GLYMA14G33700.1 (Glycine max), 5'ss of exon 9
lower sequence: EFJ21395 (Selaginella moellendorffii), 5'ss of exon 8
TTTGGAAGTTTGGAGAAGAGGGGAACAAATATTTCCGACATGCAACTGGGCAGATATATGCAATCTCTAAGGATCTAGCCACCTACATTTCCATTAACCAgtatggatacagttttccatgcact--actaagtcatctataattgagaccagaggagctaatcttgaccatacaactatattgcatgaatagatttaagta
 |||||||||||||||||| || || |  || || || || |||||||| ||| ||||||| || || |||||||| || || || || ||||||||||||||||  |  |    | || ||  |  | | | || |||||  |||   || ||    ||  ||||   ||                               
ATTGGAAGTTTGGAGAAGATGGCAATAGGTACTTTCGTCACGCAACTGGTCAGCTATATGCGATTTCCAAGGATCTGGCGACATATATCTCCATTAACCAgtatgtttgga----tgcaagctttggattcaatcttctat--ttgtttcctgattttctcttcttttgcag------------------------------