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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttgtcttcgttcttagtcatgcattttgttcatatgtgcatatttgatgcctcctaatattcatttcttatcaggcagaaatagattatcctg...

Basic information

species Glycine max
transcript GLYMA14G31890.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482466|gb|AW201723.1|AW201723
EST:     AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT                         GATGCTGTTTCTCTTGCCCGCACGGAAGAAGAGCCTGANGCAGCTGCACGA
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: gi|254347036|gb|GR856706.1|GR856706
EST:     AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT                         GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: gi|6726794|gb|AW311148.1|AW311148
EST:     AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT                         GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: gi|14011351|gb|BG726273.1|BG726273
EST:     AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT                         GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: gi|19348049|gb|BM892581.1|BM892581
EST:     AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT                         GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: gi|7588767|gb|AW704555.1|AW704555
EST:     AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT                         GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGA
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGA
EST: gi|15337173|gb|BI497829.1|BI497829
EST:     AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT                         GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: gi|16344154|gb|BI969749.1|BI969749
EST:     AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT                         GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
EST: gi|208076237|gb|GD879044.1|GD879044
EST:     AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGAT                         GATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA
genomic: AACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttg ... gtatgctcagGATGCTGTTTCTCTTGCCCGCACGGAAGAGGAGCCTGAGGCAGCTGCACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCAGGAGATAGATGAACAAATTGAACTGATTATTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATgtaagctttgtcttcgttcttagtcatgcattttgttcatatgtgcatatttgatgcctcctaatattcatttcttatcaggcagaaatagattatcctg

- - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataga