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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgtaatccaattgcttgactttgccataccttgttcttattctcttttttacctttctaatgtcttctgttaatgccag

Basic information

species Glycine max
transcript GLYMA14G11220.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G11220.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 9
TGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgta------atccaatt---gcttgact-ttgccataccttgttcttattctcttttttacctttctaatgtcttctgttaatgccag
|||||| |||||||| ||  |||| || |  |||||| |||| || ||||| ||||||||||||||||||||||| ||       | ||| |    ||   |   |||  ||   ||    |  || |  ||   |  | | |  | |||| ||  ||||  ||
TGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTTgtacgtgcttcttacccagtgaaggccaaatcgttgaaatctgttaacttggttataattcagaattgttttttctcttttg--aatggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208292969|gb|GE096303.1|GE096303
EST:     ACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTT                         GGATTTATCCTACAACCAACTAACTGGAGAGATACCATTCAATATTGGATT
genomic: ACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgtaatc ... ttaatgccagGGATTTATCCTACAACCAATTAACTGGAGAGATACCATTCAATATTGGATT
EST: gi|193723857|gb|FK661793.1|FK661793
EST:     ACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTT                         GGATTTATCCTACAACCAATTAACTGGAGAGATACCATTCAATATTGGATT
genomic: ACAGGAAGTATTCCAGAGAACATAGGCAATTGTACTGCCTTCCAGGTCTTgtatgtaatc ... ttaatgccagGGATTTATCCTACAACCAATTAACTGGAGAGATACCATTCAATATTGGATT