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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGATCATGATAAGGCTGCGGCATCCTAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAGgtcagttttgttttatgcattaagttacgtagtattggttgggagattgcaggaaggatgcaattgtatggactttttttttgtgtgattttcttgaaaa...

Basic information

species Glycine max
transcript GLYMA14G10790.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10790.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 8
TTGAGATCATGATAAGGCTGCGGCATCCTAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAGgtca-gttttgttttatgcattaagttacgt---agtattggttgggagattgcaggaaggatgcaattgtatggactttttttttgtgtgattttcttgaaaa
|||| |||||| | ||  || ||||||||||||| || || || ||||||||| |||||||| ||||| || |||||||  | ||||||||||| ||||||||| |   | ||||       ||    | |   |  ||   || |     ||     | |  | |    ||  |   || || |     | ||   | |    
TTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAAGgtcaagacctattttcaattccaaaaggcattagaagatatatttgttatctgtttctaaggagtataattaaagttcttgttatcaaaagtttgcatcg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193677298|gb|FK620520.1|FK620520
EST:     GCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAG                         AGGCAGTTTAAATATAGGCTATTGCATCGTCCCAAATCTTCGACTTGATGA
genomic: GCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAAGgtcagttttg ... tggcatacagAGGCAGTTT--ATATAGGCTATTGCATCGTCCC-AATCTTCGACTTGATGA