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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatgtcatcatcatgtaccatgtgattcataagctccagcttctttagctacttgagattgtttttaacctgctgtttggtagtttggtattgat...

Basic information

species Glycine max
transcript GLYMA14G10520.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10520.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0008g00650.t01 (Vitis vinifera), 5'ss of exon 9
TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatgtcatcatcatgtaccatgtgattcataagctccagcttctttagctacttgagattgtttttaacctgctgtttggta-gtttggtattgat
||| || |||||||  |||||| ||||||||||||||||||||||| || ||| |     |   |  || ||    |  |  | |    |  |  |  |||| | |     || |   ||  |   || |    |       ||
TGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGgttagtctgttaaatctacacaa-atttgcagaaggacattctttcttctatgtgactttacacaaacttgattatgaggagaggcacaaataactcaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688550|gb|BF596226.1|BF596226
EST:     TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG                         GTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATT
genomic: TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatgt ... ttttatgtagGTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATT
EST: gi|193632285|gb|FK581869.1|FK581869
EST:     TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG                         GTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATT
genomic: TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatgt ... ttttatgtagGTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATT
EST: gi|193581283|gb|FK535510.1|FK535510
EST:     TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG                         GTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCAT
genomic: TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatgt ... ttttatgtagGTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCAT
EST: gi|10843821|gb|BF067074.1|BF067074
EST:     TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG                         GTCTTCATCATCG
genomic: TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatgt ... ttttatgtagGTCTTCATCATCG
EST: gi|15287707|gb|BI471598.1|BI471598
EST:     TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG                         GTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATT
genomic: TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAGgttcgtatgt ... ttttatgtagGTCTTCATCATCGGACCGGTGAAGGAGGTGAGGAAAGCCGAGGCCATGATT