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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCCTAAACGGTGGTGGGTTTTTGGGCTTGATCTAGCTCTTCATGGTGATATTGATGTGTACCAATTCAAGTTCTTTACGGAACTGATAACAGAGAAAgtaaatattctttctgttttatcttttgtctcttcatttctaagaaatggtgaagtacagaacaaatgtttgtgtactgcactgttagtttactaatcac...

Basic information

species Glycine max
transcript GLYMA14G08860.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g01540.1 (Oryza sativa), 5'ss of exon 10
ACTCCCTAAACGGTGGTGGGTTTTTGGGCTTGATCTAGCTCTTCATGGTGATATTGATGTGTACCAATTCAAGTTCTTTACGGAACTGATAACAGAGAAAgtaaatattctttctgttttatcttttgtctcttcatttctaagaaatggtgaagtaca-gaacaaatgtttgtgtactgcactgttagtttactaatcac----
 || ||  |  | |||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| | || ||      | | || ||  || |||||| ||||    ||| | | || |  | | |||    || | | | |   |     || ||  | |  |    |  |  | |||    ||     
GCTTCCCCAGGGTTGGTGGGTATTTGGACTTGATCTAGCTCTTCATGGTGACATTGATGTATACCAATTCAAGTTCTTTGCAGAGCTTTGCCGAAACAAGgtgcat-ttctttttgttc---cttgtatatccttctgtttaattc-tgtttatgcatttgcttttattttcatatttttggtttctcatgtacatgacattttt

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 5'ss of exon 10
ACTCCCTAAACGGTGGTGGGTTTTTGGGCTTGATCTAGCTCTTCATGGTGATATTGATGTGTACCAATTCAAGTTCTTTACGGAACTGATAACAGAGAAAgtaaata---ttctttctgttttatcttttgtctcttcatttctaagaaatggtgaagtacagaacaaatgtttgtgtact-gcactgttagtt-tactaatcac
 || |||||  |||||||||||||||| ||||| | ||||||||||||||| |||||||| || || |||||||| ||| | || ||      | | || |||| ||   | | |  | |||   || ||  |   | |||| |      |||||||    |      |  |||||| | | |   | |  ||| | ||| | | 
GCTTCCTAATGGGTGGTGGGTTTTTGGCCTTGACCAAGCTCTTCATGGTGACATTGATGTCTATCAGTTCAAGTTTTTTGCAGAGCTATGTCAACAAAAGgtaagtacattgcgtcatctttaggctattagcaaattatttttg-----tggtgaatgctatggtctacatttgtgaatttgttgtttcggttcttctagtgaa

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 6
ACTCCCTAAACGGTGGTGGGTTTTTGGGCTTGATCTAGCTCTTCATGGTGATATTGATGTGTACCAATTCAAGTTCTTTACGGAACTGATAACAGAGAAAgtaaatattctttctgttttatcttttgtc--tcttcatttctaagaaatggtgaagt-acagaacaaatgtttgtgtactgcactgttagtttactaatcac---------------------------------------------------------------------------------------
 || || ||  | |||||||||||||| ||||| | ||||||||||||||| |||||||| ||||| |||||||| ||| | ||  ||     | |||| |||| |    |||||| | |   |  | ||     |  | || |    ||  | || |    |    |||  | |   | | | || | || ||  | |  ||                                                                                       
GCTTCCCAATGGATGGTGGGTTTTTGGTCTTGACCAAGCTCTTCATGGTGACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAGgtaatttcattttctggtcttcgtggtatcagcagttgtgtcaagttcattttaaatttggtggtttaatagtagcacattactctataagcttgatcagtactgaagaccttgttatcataagcagaaaacattgaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcag

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G135839_T01 (Zea mays), 5'ss of exon 10
ACTCCCTAAACGGTGGTGGGTTTTTGGGCTTGATCTAGCTCTTCATGGTGATATTGATGTGTACCAATTCAAGTTCTTTACGGAACTGATAACAGAG-AAAgtaaatattcttt-ctgttttatcttttgtctcttcat-ttctaagaaatggtgaagtacagaacaaatgtttgtgtac-tgcactgttagtt--tactaatcac
 || || ||  | |||||| | ||||| |||||| || |||| ||||| ||| ||||||| |||||||||||||||||| | ||  |  |  ||||  || ||  || |||||  ||   | ||||||| | |||| |   ||     | |     | |   |     | ||  |   || |||  |  || ||  | |||     
TCTTCCCAAGGGTTGGTGGATATTTGGTCTTGATTTATCTCTCCATGGCGATGTTGATGTATACCAATTCAAGTTCTTTGCTGATGTT-TGTCAGAATAAGgtgcattttcttcgcttgctcatcttttttttctttaaactcctttcatttccttatttttggtttcacgtgggacaacatgcgttagtaattgcttcta-----

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 9
ACTCCCTAAACGGTGGTGGGTTTTTGGGCTTGATCTAGCTCTTCATGGTGATATTGATGTGTACCAATTCAAGTTCTTTACGGAACTGATAACAGAGAAAgtaaatattctttctgttttatctttt-gtctcttcatttctaagaaatggtgaagtacagaacaaatgtttgtgtact---gcactgttagtttactaatcac
 || |||||| | |||||||| |||||  | |||||||| |||||||||||||||||||||||||| ||||| |||||| |  || |  | |  ||||| ||| ||      ||   ||| | | |  | ||    |    |     ||| |    |||| || | ||     |  |||   || || ||  | |  |  ||| 
GCTACCTAAAGGATGGTGGGTGTTTGGTTTGGATCTAGCGCTTCATGGTGATATTGATGTGTACCAGTTCAATTTCTTTTCTAAATTAGTGAAGGAGAAGgtagattcaacatcatctttctttctcaggctaaatagactttgcggatgcta---tacaaaatatattcccatcaactcgagctcttttcttcttttgttca-

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 10
ACTCCCTAAACGGTGGTGGGTTTTTGGGCTTGATCTAGCTCTTCATGGTGATATTGATGTGTACCAATTCAAGTTCTTTACGGAACTGATAACAGAGAAAgtaa----atattctttctgttttatcttttgtctcttcat-ttctaagaaatggtgaagtacagaacaaatgtttgtgtactgcactgttagtttactaatcac
|||||||||| | |||||||| ||||| || |||||||| || |||| ||||||||||||||| |||||||| ||||||  |||| | || |  || || |||     ||    ||| | ||| || |||| |    |||  || | |   || |||| | | | |  | |||  |  ||        | |  | |   |     
ACTCCCTAAAAGATGGTGGGTATTTGGTCTGGATCTAGCACTCCATGCTGATATTGATGTGTATCAATTCAACTTCTTTGTGGAATTAATTAAGGACAAGgtatcttcattacttttttctttcatttttttttaaatcacattttgatgtattgtgatgcaaatattacatgaataggttagatcagggttctctggca-----

upper sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S72_100V6.1 (Physcomitrella patens), 5'ss of exon 8
ACTCCCTAAACGGTGGTGGGTTTTTGGGCTTGATCTAGCTCTTCATGGTGATATTGATGTGTACCAATTCAAGTTCTTTACGGAACTGATAACAGAGAAAgtaaatattctttctgttttatcttttgtctcttcatttctaagaaatggtgaagtacagaacaaatgtttgtgtactgcactgttagtttactaatcac-
 || |||    | |||||| |||||||  |||||| ||||||||||||||| |||||| | | ||| |||||||  || || ||| |  | | |||| | || | | |  |     |||    || |  | | | |     ||  ||  |     |  || | || ||||   |   || |   ||| | | | | |    
TCTTCCTTGTGGTTGGTGGATTTTTGGCTTTGATCAAGCTCTTCATGGTGACATTGATATCTTCCAGTTCAAGTATTTCACAGAAATCGTGAAAGAGCATgtgagtttgatagaattttctctttctaacacgtaagcaagaatcaaatgcattatttagtataa-tgttaaggatgtgtatcattaatcttccattattg