1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGCCACTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttcctgttatgttcagttttggtgatgtactgacattttttctttttaatggttagatgataacatttctttagaaccaataattagcaatttatggtacattgcatttaaacttgatcag
species | Glycine max |
transcript | GLYMA14G08450.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACT TTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCAEST: gi|11688844|gb|BF596520.1|BF596520
genomic: GCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
EST: ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACT TTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCAEST: gi|193436624|gb|FK400853.1|FK400853
genomic: ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
EST: ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACT TTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCAEST: gi|208291466|gb|GE092952.1|GE092952
genomic: ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
EST: GCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACT TTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCAEST: gi|12689961|gb|BG156297.1|BG156297
genomic: GCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
EST: ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACT TTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
genomic: ATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttc ... acttgatcagTTCTCGAGACGACCTAGACTTGGGACAACAATGGACATGAGAGCACAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCACTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCAGCACTgtaagatttcctgttatgttcagttttggtgatgtactgacattttttctttttaatggttagatgataacatttctttagaaccaataattagcaatttatggtacattgcatttaaacttgatcag
- - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - AGCTCA