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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTACATCTGTGGGAGGCTTTTATGCCATCAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatgtttctgaccatgttataacttttttgttgtaaagtggggtatgaaatgccatttttacaaatttcatttggttatcacag

Basic information

species Glycine max
transcript GLYMA14G06340.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 9
AGCTACATCTGTGGGAGGCTTTTATGCCATCAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatgtttctgaccatgttataacttttttgttgtaaagtggggtatgaaatgccattttta-caaatttcatttggttatcacag
  || |  |    || || |||||||||||||| |||||||| |||||||||   || || ||||||||   ||||||||||  |||||||||  | ||||||||||     ||   |  ||| ||  |||   ||   || | |    | |  | |||||| || ||||  |||  |     |||
GTCTTCTGCAAGTGGTGGTTTTTATGCCATCAATAGGAGAGGACAGGTTTTACATGCCACAGTTAATGATGCAACCATTGTGCCTTTTGTCAGCAGTCAAgtatgttct---cctgctcttaaattacttggctta---tgtgcttgctattatcgtttttaacacattttgttttat----gcag

upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 9
AGCTACATCTGTGGGAGGCTTTTATGCCATCAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatgtttctgaccatgttataacttttttgttgtaaagtggggtatgaaatgccattttta-caaatttcatttggttatcacag
  || |  |    || || |||||||||||||| |||||||| |||||||||   || || ||||||||   ||||||||||  |||||||||  | ||||||||||     |     |  || |  || | |     |   | |||    |  | |||||| || ||||  |||  |     |||
GTCTTCTGCAAGTGGTGGTTTTTATGCCATCAATAGGAGAGGACAGGTTTTACATGCCACAGTTAATGATGCAACCATTGTGCCTTTTGTCAGCAGTCAAgtatgttctc--ctgcccttaaattacttggcttatgtgcttgctat----tatcgtttttaacacattttgttttat----gcag

upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 7
AGCTACATCTGTGGGAGGCTTTTATGCCATCAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatg-tttctgaccatgttataacttttttgttgtaaagtggggtatgaaatgccatttttacaaatttcatttggttatcacag
| || | |||   || || ||||||||||||||||| ||||| |||||||||   || || ||||||||   |||  ||||    ||||| || ||||| ||||| | | | ||  |  |    ||  |||| ||   |   |  | | ||||     ||||  |||    |||| | |||  |||
ATCTTCCTCTACTGGTGGATTTTATGCCATCAACAGAAGAGGGCAGGTTTTACATGCCACGGTTAATGATGCAACTGTTGTACCATTTGTTAGCGGCCAGgtatgatcttttacacttctgggtctactttgctg---atctgcttgttaaataattctttt-taaacacaattttggtat-gcag

upper sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 9
AGCTACATCTGTGGGAGGCTTTTATGCCATCAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatgtttctgaccatgttataacttttttgttgtaaagtggggtatgaaatgccatttttacaaatttcatttggttatcacag---
|||||||||| | ||||| |||||||||||||| ||| |||| ||||| ||| | |||||||| |||||   | | ||||||  ||| |||||||||||||||||||||||| |   ||     |  ||||| | |     |   || |  | |  |  |||   || | || || || | |  |   
AGCTACATCTATTGGAGGTTTTTATGCCATCAATAGGCGAGGGCAGGTGTTACTTGCTACTGTAAATGAGGCAGCAATTGTGCCTTTCGTCAGTGGCCAAgtatgtttctgagctgatt-----tcctttgtggcatgtcagaaaattatcttctgtgcttatggatgttatctgattcttattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20815168|gb|BQ299646.1|BQ299646
EST:     TATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAA                         CTAAACAATTTGGAGCTAGCAGTTAGTCTTGCCAAAAGAGGAAATCTTCCT
genomic: TATTGGCTACTGTTAATGAACAAACCATTGTGAATTTTGTCAGTGGCCAAgtatgtttct ... gttatcacagCTAAACAATTTGGAGCTAGCAGTTAGTCTTGCCAAAAGAGGAAATCTTCCT