1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTTGATTTTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGgtacttgaaacatttatttggaagtttttgtgcaagtttccctaaaatgcttctgtaatttccaatacttttgaaatgaaaatcatgctttctgaattat...
species | Glycine max |
transcript | GLYMA14G05430.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG GTCAAAATTTGGTGTEST: gi|193629154|gb|FK578102.1|FK578102
genomic: TTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGgtacttgaaa ... ctttgagcagGTCAAAATTTGGTGT
EST: TTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG GTCAAAATTTGGTGTACAAATCAGGAAGCTAGTGTTCTAAATAEST: gi|7042199|gb|AW472102.1|AW472102
genomic: TTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGgtacttgaaa ... ctttgagcagGTCAAAATTTGGTGTACAAATCAGGAAGCTAGTGTTCTAAATA
EST: TTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG GTCAAAATTTGGTGTACAAATCATGAAGCTAGTGTTCTAAATATAGACATGEST: gi|151403867|gb|EV273677.1|EV273677
genomic: TTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGgtacttgaaa ... ctttgagcagGTCAAAATTTGGTGTACAAATCAGGAAGCTAGTGTTCTAAATATAGACATG
EST: TTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAG GTCAAAATTTGGTGTACAAATCAGGAAGCTAGTGTTCTAAATATAGACATG
genomic: TTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGgtacttgaaa ... ctttgagcagGTCAAAATTTGGTGTACAAATCAGGAAGCTAGTGTTCTAAATATAGACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTTGATTTTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGgtacttgaaacatttatttggaagtttttgtgcaagtttccctaaaatgcttctgtaatttccaatacttttgaaatgaaaatcatgctttctgaattat
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