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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTAGGAACTGATCATTGTGCCTTTAATTCCACCCAAAAAGCTCGTGGAATCGATGACTTCCGGAAAATGCCTAATGGTGTCAATGgtaatcacatgaaagtcttggatatttgtggcctaaatgcattcttgctgattttgaaatgtttccttactgatatacaatgcaacctgtag

Basic information

species Glycine max
transcript GLYMA14G04030.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 9
lower sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 9
CTGGTAGGAACTGATCATTGTGCCTTTAATTCCACCCAAAAAGCTCGTGGAATCGATGACTTCCGGAAAATGCCTAATGGTGTCAATGgtaatcacatgaaagtcttggatatttgtggcctaaatgcatt---cttgctgattttgaaatgtttccttactgatataca-atgcaacctgtag
|| |||||||||||||| ||  | || ||||| || ||||||||||  ||| | ||||| ||||| | ||| ||||||||||| |||||||||  | |||      ||| |  |||    ||     || |   | |||| |  |  ||||  ||    |||  |  | |  |  |        
CTTGTAGGAACTGATCACTGCACTTTCAATTCTACACAAAAAGCTCTAGGACTTGATGATTTCCGCAGAATACCTAATGGTGTTAATGgtaatagc-tgacttgactggtttcttgctttctctgctcactgcccctgctaacctgtaaatacttttgaacttgtccatatgtttag-------

upper sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 9
CTGGTAGGAACTGATCATTGTGCCTTTAATTCCACCCAAAAAGCTCGTGGAATCGATGACTTCCGGAAAATGCCTAATGGTGTCAATGgtaat-ca---catgaaagtcttggatatttgtggcctaaatgcat-tcttgctgattttgaaat--gtttccttactgatatacaatgca---acctgtag-------------------
|| ||||| ||||||||||||||||| |||||||| || ||||||  |||||| ||||| ||||| ||||| ||||||||||||||||||||| ||    || |    |   |||||||| |   | |||   | | |  ||  || | || |  || || ||  |    |  ||| |    |  ||| |                   
CTTGTAGGGACTGATCATTGTGCCTTCAATTCCACACAGAAAGCTTTTGGAATTGATGATTTCCGAAAAATTCCTAATGGTGTCAATGgtaatacaagttatcatcaccactgatatttgggaagtcaattattatttccctagttatcaagttggtctcatttttccgttctaattcttatatttgttgcaatcctgggaacaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773716|gb|BG238643.1|BG238643
EST:     AAAAGCTCGTGGAATCGATGACTTCCGGAAAATGCCTAATGGTGTCAATG                         GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
genomic: AAAAGCTCGTGGAATCGATGACTTCCGGAAAATGCCTAATGGTGTCAATGgtaatcacat ... caacctgtagGTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
EST: gi|8826144|gb|BE209804.1|BE209804
EST:     AAAAGCTCGTGGAATCGATGACTTCCGGAAAATGCCTAATGGTGTCAATG                         GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
genomic: AAAAGCTCGTGGAATCGATGACTTCCGGAAAATGCCTAATGGTGTCAATGgtaatcacat ... caacctgtagGTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
EST: gi|14989991|gb|BI315664.1|BI315664
EST:     AAAAGCTCGTGGAATCGATGACTTCCGGAAAATGCCTAATGGTGTCAATG                         GTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG
genomic: AAAAGCTCGTGGAATCGATGACTTCCGGAAAATGCCTAATGGTGTCAATGgtaatcacat ... caacctgtagGTATTGAAGAAAGAATGCATTTGGTATGGGATATCATGGTG