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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAGgtaaggggctcccttgaagggaacttctcttactgatattgtgaatgcttcttactatgttgaatgtgcctaatgttctgtctgagttagttttgtttgttatcatattttag

Basic information

species Glycine max
transcript GLYMA14G02550.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02550.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os07g32670.1 (Oryza sativa), 5'ss of exon 8
TGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAGgtaaggggctcccttgaagggaacttctcttactgatattgtgaatgcttcttactatgttgaatgtgcctaatgttctgtctgagttagttttgtttgttatcatattttag
||||||||||||||| |||||| | || ||||||||||| || ||||||| |||        || |||     ||||| ||  | | | |    |    ||| |||      | ||   |  | |  |  | |                             
TGTTGGTGCTGGGTGTTCTCAACTTCTATCAGATATGCAAGCCTTCAAGgcaag-------tttaaagctgctttctcatag-gctgtggctgctataactttctaaacaagaagttttttct-tcttaacag-----------------------------

upper sequence: GLYMA14G02550.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G076387_T01 (Zea mays), 5'ss of exon 8
TGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAGgtaaggggctcccttgaagggaacttctcttactgatattgtgaatgcttcttactatgttgaatgtgcctaatgttctgtctgagttagttttgtttgttatcatattttag
| |||||||||| ||||||||| | || |||||||||||||||||||||| |||        || || |    |  ||| |  || | |   ||||||    | ||   ||||  | |  ||    |  | |         || ||  |||           
TCTTGGTGCTGGATGCTCTCAACTTCTATCAGATATGCAGGCTTTCAAGgcaag--------tttaaagctgttcttctca--gagaatac-aatgct----attaaactgaacttcctaaacaagcaattt--------ctttttcattacag--------

upper sequence: GLYMA14G02550.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0090g00690.t01 (Vitis vinifera), 5'ss of exon 9
TGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAGgtaaggggctcccttgaagggaacttctcttac------tgatattgtgaatgct----tcttactatgttgaatg------------tgcctaatgttctgtctgagttagttttgtttgttatcatattttag
|||||||||||| || |||||| | || ||||| ||||||||||||||||| | |   | |  |||||  ||  |   | |       ||||  | |  |||||    | || |  || |  |||            |||  || | ||  ||||| | | || | ||  ||||||| | ||||
TGTTGGTGCTGGATGTTCTCAACTACTTTCAGACATGCAGGCTTTCAAGgtgaagttttactgtgaagaaaatattattcatatttcttgatcctctagatgctgattttttgccttgatatatgaagaaaaaaacatgcgcaaggatcaatctgactgacttctattaattatcatgtcttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256661|gb|BQ453549.1|BQ453549
EST:     TGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCNNNNNNN                         GTTGCAAATCCTGGATGTATTTTGGAGGATTTTGTAAGATGGCACTCTCCT
genomic: TGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAGgtaaggggct ... catattttagGCTGCAAATCCTGGATGTATTTTGGAGGATTTTGTAAGATGGCACTCTCCT