Sequence
atgc intronic sequence ATGC exonic sequenceATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGgtagttaattatctgtagcatattaaataccccttatatttttggagccatatttactacacaataatacattcttattgatttcttgtttgcttcatgcattttaccactaaacag
Basic information
species | Glycine max |
transcript | GLYMA14G02380.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os08g42410.2 (Oryza sativa), 5'ss of exon 7
ATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGgta-gttaattatctgtagc-atattaaataccccttatatttttggagccatattt--actacacaataatacattcttattgatttcttgtttgcttcatgcattttaccactaaacag
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CTATGGTGAATCATTCCCTGTTTCTGCGGAAGTTCTTGATTCTAGCTTCTGTCTTCCGATTGGGAAGGCTAAGgtatgctgtatagttgtattgatttcgtagtaggatgagttttatttggtcaggtttcggtttctggtttgcctggaagagtttatttct-gatggctgctttcatttttcta-tgtgtag
upper sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 9
lower sequence: AT5G50850.1 (Arabidopsis thaliana), 5'ss of exon 10
ATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGgtagttaattatctgtagcatattaaataccccttatatttttggagc-catatttactacacaataatacattcttattgatttcttgtttgcttcatgcattttaccactaaacag
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ATATGGTGAATCATTCCCTATTTCAGAAGAAGCCCTTGATTCAAGTTTCTGTCTTCCCATAGGCAAAGCCAAGgtact--gtcactcagtatctattgtcttcttcttatgtgtctctttcatctttcttctatctagcagttggatgct-ttaatgttgtctttgcctataacag---------------
upper sequence: GLYMA14G02380.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv17s0000g00690.t01 (Vitis vinifera), 5'ss of exon 9
ATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGgtagttaattatctgtagcatattaaataccccttatatttttggagccatatttactacacaataatacattcttattgatttcttgtttgcttcatgcattttaccactaaacag
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ATATGGTCAGTCTTTCCCTGTTTCAGAGGAAGCTCTTGATTCCAGTTTCTCCCTTCCAATAGGGAAAGCAAAGgtgctt---tttct-taacattcttgttgctgctgataatgattt--ttatctttag-atgcaattattcttcct------cttcttggctattgaag-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151398119|gb|EV267997.1|EV267997EST: CGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAG ATTGAGAGGGAAGGGAAAGATGTGACTATTACAGCCTATTCAAAAATGGTT
genomic: CGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGgtagttaatt ... cactaaacagATTGAGAGGGAAGGGAAAGATGTGACTATTACAGCCTATTCAAAAATGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATGGTGAGTCATTCCCTGTTTCGGCCGAAGTTCTTGATTCCAGTTTTTGCCTTCCCATAGGAAAAGCAAAGgtagttaattatctgtagcatattaaataccccttatatttttggagccatatttactacacaataatacattcttattgatttcttgtttgcttcatgcattttaccactaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG