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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGTGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttgtcatttgcgtgtgcttgggtatactgttttgattcatttcatgatcactaacttgtcctgttttttttggtgattcactaacttgtcctttgattattgagcag

Basic information

species Glycine max
transcript GLYMA14G01480.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 5'ss of exon 12
TTTCAGTGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttgtcatttgcgtgtgcttgggtatactgttttgattcatttcatgatcactaacttgtcctgttttttttggtgattcactaacttgtcctttgattattgagcag
      ||| ||||||||||| ||||| || || ||||||||||||||||| || |||||||| ||||||||||| || ||||| ||||||||  ||||||||||   ||    |    ||||   || |  || || | | |  |  || |||||  | |    ||  ||   |                                  
------TGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGCAAAGGTATAAAAATTGGGAAGATTCTTATTCACAGGGAAGGAGACAATGGCAAACAGgtttggt-ttaatctacttttggcattatttgttggagttagtcaa--attactaagctcttg-attccttgcag----------------------------------

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 12
TTTCAGTGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttgtcatttgcgtgtgcttgggtatactgt-tttgattcatttcatgatcactaacttgtcctgttttttttggtgattcactaacttgtcctttgattattgagcag
      ||| ||||||||||| ||||| || || |||||||| |||||||| || |||||||| ||||||||||| |||||||| ||||||||  ||||||||||   |||   | | |||  ||||  | | || || | |  |||  || ||| |  | |    ||  ||   |                                  
------TGGTGAGAGTATGGAGAATGCATTGCGGGCATGCTGTAAAGGTATAAAAATTGGGAAGATTCTTATTCACAGAGAAGGAGACAATGGCAAACAGgtttg--gttta-atctacttttgtattgtttgttggagttaagtcac-attactgagctcttg-attccttgcag----------------------------------

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 12
TTTCAGTGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttgtcatttgcgtgtgcttgg-gtatactgttttgattcatttcatgatcactaacttgtcctgttttttttggtgattcactaacttgtcctttgattattgagcag
      ||| || || ||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||||||| | ||||| |||||||| |||||||| ||  ||||        |||   | |  |    ||| |||       || |||||  | |  | |||||||||  |                                
------TGGCGAAAGCATGGAGAATGCGTTACGAGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctg--atttatcaacttttgccatgtgttagggtgagtca------aattactaagatctatt-ttttttttgcag--------------------------------

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G169462_T01 (Zea mays), 5'ss of exon 11
TTTCAGTGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttg--tcatttgcgtgtgcttgggtatactgttttgattcatttcatgatcactaacttgtcctgttttttttggtgattcactaacttgtcctttgattattgagcag
      ||| || |||||||| |||||  |||| |||||||| |||||||| ||||||||||| |||||||||||| | |||||||||||||| |||||||| ||  | ||   | | |||     | |  |    ||| |||       || |||||    ||    ||| ||||  |                                
------TGGCGAAAGTATGGAGAATGCACTACGTGCATGCTGTAAAGGTATAAAGATTGGGAAGATTCTTATTCATCGGGAAGGTGACAATGGACAACAGgtctggcttatcaacttttgcc---atgtgttagggtgagtca------aattactaag--atctaaatttctttgcag--------------------------------

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 12
TTTCAGTGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttgtcatttgcgtgtgcttgggtatactgttttgattcatttcatgatcactaacttgtcctgttttttttggtgattcactaacttgtcctttgattattgagcag
       || ||||||||||| || ||| |  |||||||||||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||  | |   | ||||       |||  |   |   ||||  | |  || ||     |                                               
------CGGTGAGAGTATGGAGAACGCTCTTAGAGCATGCTGCAAAGGCATCAAAATTGGGAAGATTCTGATTCATAGAGAAGGCGACAATGGTCAACAGgtttgtgttctttctctgctcat---cacttctcctaactatttactaacaacaaatggcactcaccag----------------------------------------

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G55810.2 (Arabidopsis thaliana), 5'ss of exon 11
TTTCAGTGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttgtcatttgcgtgtgcttgggtatactgttttgattcatttcatgatcactaac----ttgtcctgttttttttggtgattcactaacttgtcctttgattattgagcag
       || ||||||||||| || ||| |  |||||||||||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||  | |   | ||||       |||  |   |   ||||  | |  || ||      |  || | || | |  | ||                               
------CGGTGAGAGTATGGAGAACGCTCTTAGAGCATGCTGCAAAGGCATCAAAATTGGGAAGATTCTGATTCATAGAGAAGGCGACAATGGTCAACAGgtttgtgttctttctctgctcat---cacttctcctaactatttactaacaacaaatggcactcaccagcttatctacgagaag-----------------------------

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 12
TTTCAGTGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttgtcatttgcgtgtgcttgggtatactgttttgattcatttcatgatcactaacttgtcctgttttttttggtgattcactaacttgtcctttgattattgagcag
      ||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| || || ||||| ||||||||||||||||||||||||||     | |  |   |  ||   |  |      || |   |||||| |    | |  |   |||| |   |  |                                  
------TGGTGAGAGCATGGAGAATGCGTTACGAGCATGTTGCAAAGGTATCAAGATCGGGAAGATCCTAATTCACAGAGAAGGTGACAATGGTCAACAGgtaaacgagtcactcctatttcattccagg----tgttctgtttcatcactgttgatgt---ctgtatcactgtgcag-------------------------------

upper sequence: GLYMA14G01480.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 12
TTTCAGTGGGGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGACAATGGTCAACAGgtttgtca----------tttgcgtgtgcttgggtatactgttttgattcatttcatgatcactaactt-gtcctgttttttttggtgattca----ctaacttgtcctttgattattgagcag
      ||| ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||| | ||          | |  || | ||||  |    ||    ||  || | ||      |   |   |   | | | |  |     ||       |   || |  ||  || | ||  |||
------TGGTGAGAGTATGGAGAATGCTTTGCGAGCATGTTGCAAAGGTATCAAAATTGGGAAGATTCTTATCCATAGGGAAGGGGATAACGGTCAGCAGgttggacagatctctctctctctgtatccttgtctcccatgcacagacacactacacacatgcatgcacagatatctatctactaacattttgactgtttttttatgtttcaatgactggacag