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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTATTCGAGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatttcttacttgcgcctgtaaattgtgttggtagcagttattaatgttttttcaacataaacaatcgatggtcgagatgtttggtcaaagcat...

Basic information

species Glycine max
transcript GLYMA13G44960.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44960.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g27960.1 (Oryza sativa), 5'ss of exon 9
TGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTATTCGAGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgtt------atttcttacttgcgcctgta--aattgtgttggtagcagttatta-atgttttttcaacataaacaatcgatggtcgagatgtttggtcaaagcat----
  |||| |||   |||||  || |||||||||||||||||||||| |||||||| || || |||||||| || ||  | || || ||||||||| ||||||| ||||      | || |||    |  |||||    |  |  |     || |||  | |  | ||      || | | |  |    |    ||  |   | || |  |    
AATTGGCTGGATAATGGGCCAACAAATGGACTTGAATTTTCAACTGTTCGAGACAGCAACTCTTTTTATAACAGTACTGGTGGTGGCATTTATGTTGCAGgtgtgtttagagaacttattagcatcctctgtattgttcatactttatacaattacaagagatcttacttttatgatctagtgcacattctaattctgaataaatgtttccag

upper sequence: GLYMA13G44960.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os04g55940.2 (Oryza sativa), 5'ss of exon 9
TGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTATTCGAGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatttcttacttgcgcctgtaaattgtgttggtagcagttattaatgttttttcaacataaacaatcgatggtcgagatgtttggtcaaagcat--
  |||| |||   |||||  || | |||||||||||||| ||||||||||| || || ||||| || || || ||  |||| || ||||||||| | |||||| ||||||   |         |   |||| | ||| ||   | |       |  |    |  |   ||| |  || | |   |  |  | |   |||   
CATTGGTTGGATGATGGGGCAAAAGATGGACTTGAATTTCCAACTATTCGAAACAGCAACGCTCTTCATAACAGTACTAGTCGTGGCATTTATGCTACAGgtaggttattgtgtga--aatattaagaattattttgataagggatgcctgcttaatgaagagtttgtcaagctgtgtttgtttttgtatgccttggcacat

upper sequence: GLYMA13G44960.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G053004_T03 (Zea mays), 5'ss of exon 9
TGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTATTCGAGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgtt---atttcttacttgcgcc---tgtaaattgtgttggta---gcagttattaatgttttttcaacataaacaatcgatggtcgagatgtttg-gtcaaagcat--------------
  |||| |||   |||||| ||||||||||||||||||||||||| |||||||| || || || ||||| |||||  |||| || ||||| ||| | |||||||| |   |   |  |    |  |   |   | ||   |  |||   | ||||| ||       |      ||  | ||   | ||    ||||||   |   |  ||              
AATTGGCTGGATGATGGGACAAGAAATGGACTTGAATTTTCAACTGTTCGAGACAGCGACTCTCTTTATAACTGTACTAGTGGTGGCATTCATGCTACAGgtatgcttacagaacaaagcaacatcctattctattttcctctgtatatgaagttactacacgggctgttttgtagcctatttttagttctaatgttttcattttattatatatgtttttccag

upper sequence: GLYMA13G44960.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0018g01840.t01 (Vitis vinifera), 5'ss of exon 10
TGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTATTCGAGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttat----ttcttacttgcgcctgtaaattgtgttggtagcagttattaatgttttttcaacataaacaatcgatggtcgagatgtttggtcaaagcat
|||||| |||   |||||| ||  ||||||||||||||||||||| || ||||||||||| || |||||| | ||| ||||||| ||||||||| ||||||| ||||||    ||| |  || | | | ||  ||  |||     || | |   || |       |||||     |  ||  |    | || | ||   | |||
TGTTGGTTGGATTATGGGACAACCAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACTCTCTTTATCGCGGTGCTAGTAGTGGCATTTATGTTGCAGgtttgttatcaagttcctcatttcccttttagttttggttttggtcaatcaccgatatggac---acatatcttgttaattttgtctaggtcttgt-gcatcat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319188|gb|FK010668.1|FK010668
EST:     AGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAG                         GAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTA
genomic: AGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatt ... ttccatgcagGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTA
EST: gi|192315878|gb|FK005709.1|FK005709
EST:     AGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAG                         GAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTA
genomic: AGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatt ... ttccatgcagGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTA
EST: gi|151402628|gb|EV272441.1|EV272441
EST:     AGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAG                         GAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTA
genomic: AGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatt ... ttccatgcagGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTA
EST: gi|192319189|gb|FK010669.1|FK010669
EST:     AGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAG                         GAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTA
genomic: AGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatt ... ttccatgcagGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTA
EST: gi|192328537|gb|FK020769.1|FK020769
EST:     AGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAG                         GAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTA
genomic: AGACTGCCACGCTTTTTATCACTGTGTTAGTAGTTGCATTTATGATGCAGgtatgttatt ... ttccatgcagGAAGGAACCTCAAATTATTTTAAAGGGTTGATGCTTATTCTATGCTATCTA