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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAAAGACAGTATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacatgtaggtccagaaaagttttttgttacagatatgctgttaaagcatgagtagttataaagagcatgtattatttgataaattaagtaatat...

Basic information

species Glycine max
transcript GLYMA13G44940.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44940.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0018g01270.t01 (Vitis vinifera), 5'ss of exon 9
AACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAAAGACAGTATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacatgt-----aggtccagaaaagttttttgttacagatatgctgttaaagcatgagtagttataaagagcatgtattatttgataaattaagtaatat
| ||| ||||||||| | ||||| ||  | || ||||||||||||||  | ||||||||||||| ||||| |||  ||||| |||| || |||||||||||||      |||     |   ||    |  | || | ||     ||  ||  ||    |||  ||| | ||  ||  || |  || ||| |   ||   |  |||
ACCCATGAAGATATCATAAATATTGTCGATAGGATGTATGAGAAAGATGGCATATCTAGGGATGCAGTTGTAAGAATTGTGGACACATTTCCTAATCAAGgtatcagtctgttctacatcgccttgtagttattctattttttgta-acttgtatgatatgtttagctgtag-gaaaatttgataattgct---ttggatgttat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5175439|gb|AI759772.1|AI759772
EST:     TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAG                         CTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
genomic: TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacat ... ttgttgacagCTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
EST: gi|209727642|gb|BW652015.1|BW652015
EST:     TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAG                         CTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
genomic: TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacat ... ttgttgacagCTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
EST: gi|51342164|gb|CO983425.1|CO983425
EST:     TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAG                         CTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
genomic: TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacat ... ttgttgacagCTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
EST: gi|13789259|gb|BG651850.1|BG651850
EST:     TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAG                         CTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
genomic: TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacat ... ttgttgacagCTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
EST: gi|193403284|gb|FK369454.1|FK369454
EST:     ATATCTAGGGATGAAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAG                         CTTTG-ACTTTTA
genomic: ATATCTAGGGATGAA-GTTGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacat ... ttgttgacagCTTTGGACTTTTA
EST: gi|214009438|gb|DB988621.1|DB988621
EST:     TGAAAGGGTTGTGAACACTTTCCCTAATCAAG                         CTTTGGCA-GGATCTGGAGCTCTAAGATCACGTACATATGACAGATCTATT
genomic: TGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacat ... ttgttgacagCTTTGG-ACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATT
EST: gi|21594248|gb|BQ610100.1|BQ610100
EST:     TGAAAGGGTTGTGAACACTTTCCCTAATCAAG                         CTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
genomic: TGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacat ... ttgttgacagCTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
EST: gi|7639905|gb|AW734217.1|AW734217
EST:     TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAG                         CTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
genomic: TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacat ... ttgttgacagCTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
EST: gi|193577182|gb|FK536587.1|FK536587
EST:     TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAG                         CTTTGGACTTTTGTGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
genomic: TATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAGgtactcacat ... ttgttgacagCTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
EST: gi|7795496|gb|AW780893.1|AW780893
EST:     GGGTTGTGAACACTTTCCCTAATCAAG                         CTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT
genomic: GGGTTGTGAACACTTTCCCTAATCAAGgtactcacat ... ttgttgacagCTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTT