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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTCATCAAGCCCCTCCAGCAGgtaactacttcaaaccttttctggaacaatgatcgaaaaaccaagattgcttcatatatacattagtctagtagaatctatataacgaaatgcgaagttttagtggtggacttttacatcacatgttgtcaaaatgcaacactgaactgattaaaattaatctctaccatatcttgttattgtag

Basic information

species Glycine max
transcript GLYMA13G44740.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44740.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G16880.1 (Arabidopsis thaliana), 5'ss of exon 9
GGTCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTCATCAAGCCCCTCCAGCAGgtaactacttcaaaccttttctggaacaatgatcgaaaaaccaagattgcttcatatatacattagtctagtagaatctatataacgaaatgcgaagttttagtggtggacttttacatcacatgttgtcaaaatgcaacactgaactgattaaaattaatctctaccatatcttgttattgtag
||| | ||||||||||  ||||||||||| | ||||| | | |||||||| |||||||| ||||||||||| |  | |   ||  |   ||       |  | || ||    | ||   || |   | |    | || | |    | | | ||                                                                                                     
GGTTTGTTGGCTAAGGTGAAGTTTCATGTAAGCTACAGGAACAAAGCCCTAATCAAGCCTCTCCAGCAGgttaaaattctgaaattagactt---ttctctttgataagttgaaatgtttttactgaaatga-aatcaaattttgtatttgtag----------------------------------------------------------------------------------------------------

upper sequence: GLYMA13G44740.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 9
GGTCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTCATCAAGCCCCTCCAGCAGgtaactacttcaaaccttttctggaacaatgatcgaaaaaccaagattgcttcatatatacattagtctagtagaatctatataacgaaatgcgaagttttagtggtggacttttacatcacatgttgtcaaaatgcaacactgaactgattaaaattaatctctaccatatcttgttattgtag
||| | ||||| ||||||||||||||||||| ||||   |  |||||| |||||||||| ||||| |||||||      |||   |     ||       | |      |||||        | |       ||||||| |||      ||| |   ||  | ||   | |||   |                                                                             
GGTTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACCGCGGAAAAGCCATCATCAAGCCTCTCCAACAGgtaaaattagcaa---tcagagggggattcaaactgtcttccaaggccaaaaaacagccttgctagtctaatagt-----tatgattgaagactaaaact-agttaaga----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5509384|gb|AI855942.1|AI855942
EST:     AGTTTCATGTCAACTACAAGGATAAAGCCCTCATCAAGCCCCTCCAGCAG                         GTTCTTGTTAACAGCTTGAGATATTTCTTGAGACGACCTGAGACTGAGGAA
genomic: AGTTTCATGTCAACTACAAGGATAAAGCCCTCATCAAGCCCCTCCAGCAGgtaactactt ... gttattgtagGTTCTTGTTAACAGCTTGAGATATTTCTTGAGACGACCTGAGACTGAGGAA
EST: gi|151401888|gb|EV271701.1|EV271701
EST:     AGTTTCATGTCAACTACAAGGATAAAGCCCTCATCAAGCCCCTCCAGCAG                         GTTCTTGTTAACAGCTTGAGATATTTCTTGAGACGACCTGAGACTGAGGAA
genomic: AGTTTCATGTCAACTACAAGGATAAAGCCCTCATCAAGCCCCTCCAGCAGgtaactactt ... gttattgtagGTTCTTGTTAACAGCTTGAGATATTTCTTGAGACGACCTGAGACTGAGGAA