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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCGTGTCTTGAATGAACATCAACAGATTCATTCTTTTTCTGCATTCAACAGTCTCTTCAACAATACAGGGCTATTTGGCATATATGCAAGCACAgtaaggcacaatctttgctgaacgtagatgtgatgcctgttttttgctgtttttttttttctgagtttttttattcattgaaaggttggattagtgtgtc...

Basic information

species Glycine max
transcript GLYMA13G43000.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43000.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g03200.t01 (Vitis vinifera), 5'ss of exon 8
TTCTTCGTGTCTTGAATGAACATCAACAGATTCATTCTTTTTCTGCATTCAACAGTCTCTTCAACAATACAGGGCTATTTGGCATATATGCAAGCACAgtaaggcacaatcttt-gctgaacgtagatgtgatgcctgttttttgctgttttttttttt-ctgagttttt---ttattcattgaaaggttggattagtgtgtc
 ||||||||||||||||||  |||||||| |||| ||||| ||||||||||||| | ||||||||||||| ||  | |||||||| ||||| ||||| |||||||||   ||   ||   |  |     ||||     |   || |  ||| || || | |||    |||   || |   ||||| |||  |||| || |   
ATCTTCGTGTCTTGAATGAGTATCAACAGCTTCAATCTTTCTCTGCATTCAACAATATCTTCAACAATACTGGAATTTTTGGCATTTATGCTAGCACTgtaaggcaccccctaaagccttaaattaccttgatcaacatggcttacattttgttgttctactgtccatttaggttgtgtgttgaatggt--gatttgttt---

upper sequence: GLYMA13G43000.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0003g03230.t01 (Vitis vinifera), 5'ss of exon 7
TTCTTCGTGTCTTGAATGAACATCAACAGATTCATTCTTTTTCTGCATTCAACAGTCTCTTCAACAATACAGGGCTATTTGGCATATATGCAAGCACAgtaaggcacaatcttt-gctgaacgtagatgtgat--gcctgttttttgct--gtttttttttttctgagtttttttattcattgaaaggttggattagtgtgtc
 ||||||||||||||||||  |||||||  |||| ||||| ||||||||||||| | |||||||||||||  |  | |||||||| ||||| ||||| |||||||||   ||   ||   |  |     ||||   | ||  ||    |  ||| || |  |    | ||   || |   ||||| |||  |||| || |   
ATCTTCGTGTCTTGAATGAGTATCAACAACTTCAATCTTTCTCTGCATTCAACAATATCTTCAACAATACTAGAATTTTTGGCATTTATGCTAGCACTgtaaggcaccccctaaagccttaaattaccttgatcaacttggcttacattttgttgttctactgtccatttaggttgtgtgttgaatggt--gatttgttt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8402432|gb|BE058066.1|BE058066
EST:     TCAACAGTCTCTTCAACAATACAGGGCTATTTGGCATATATGCAAGCACA                         GGCTCTGATTNTGTGGCAAAAGCTGTGGATTTAGCAGCCAGAGAATTAATA
genomic: TCAACAGTCTCTTCAACAATACAGGGCTATTTGGCATATATGCAAGCACAgtaaggcaca ... atcaatatagGGCTCTGATTTTGTGGCAAAAGCTGTGGATTTAGCAGCCAGAGAATTAATA