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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCTGAGAATGGAATTGGTGTTGTAAAATTAATGGGGCGTTACAGTGgtaagcttcattcattcctctgataattttcaacttaagttccatacatatgttgaatgctgacctttgtcacttactttttctttcatgacatcttcct...

Basic information

species Glycine max
transcript GLYMA13G42990.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42990.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 7
GCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCTGAGAATGGAATTGGTGTTGTAAAATTAATGGGGCGTTACAGTGgtaagc-ttcattcattcctctgataattttcaacttaagttccatacata-tgttgaatgctgacctttgtcacttactttttctttcatgacatcttcct
|| || || ||||| ||  | || |||||| |||||||||| || || || || || |||||||| ||||||||||| ||| ||||||||||  ||||||||| |        || |    | || ||||   |  |     ||| | ||  |     |   |         |  | |  ||| ||   |            
GCGGTGGAGGAGGCTCAGAGGGCCATCAATGCTGCTCATGTTGAGGCTGAGAGTGCAGAGAATGGCATTGGTGTTGTGAAACTAATGGGGCGCAACAGTGgtatgtacctccccaatatgattatgatttatgaacttgcccccacatattctaccagaaagtactaaggagctttaaaatttactgctacag---------

upper sequence: GLYMA13G42990.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCTGAGAATGGAATTGGTGTTGTAAAATTAATGGGGCGTTACAGTGgtaagcttcattcattcctctgataattttcaacttaagttccatacat-atgttgaatgctgacctttgtca-cttactttttctttcatg-acatcttcct
|| ||||| ||||| ||||| ||||| ||| |||||||||||||||| | ||| ||||||||||| || ||| | || ||  ||||||| ||  |||||||||||||||  | |     |  |||  |  | | | |  |   |||| | |||        |    | ||||| || |||   ||||   |    |||| |  
GCAGTTGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAAGCTGTAAGTGCTGAGAATGGTATAGGTCTCGTCAAGCTAATGGGCCGGCACAGTGgtaagcttctatgagagacc-aatatgtggctagtaacatatgatacttgatgcctgtcaattgtatgtgtcaactaactaactcttgggtatgtatctgc--

upper sequence: GLYMA13G42990.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G443985_T02 (Zea mays), 5'ss of exon 9
GCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCTGAGAATGGAATTGGTGTTGTAAAATTAATGGGGCGTTACAGTGgtaagcttcattcattcctctgataattttcaacttaagttccatacatatgttgaatgctgacctttgtcacttactttttctttcatgacatcttcct----
|| || || ||||| ||||| ||||| ||| ||||||||||||| || | ||| ||||||||||| || ||| |||| ||  ||||||| ||  ||||||||||||||| | |      |  |||| ||    || |  | | |||  | |||  |||       |   | | |||  |     || |  |  |||        
GCAGTCGAGGAGGCTCAACGTGCAATAAATGCTGCTCATGTGGAGGCTGTAAGTGCTGAGAATGGTATAGGTCTTGTCAAGCTAATGGGTCGGCACAGTGgtaagcttc-tacgagaggcgaataaattatg-ctaatatacgata--tctgtcaaatatatgtgtcaattaattaactaactcttgagtatttctctgctaat

upper sequence: GLYMA13G42990.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S327_30V6.1 (Physcomitrella patens), 5'ss of exon 9
GCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCTGAGAATGGAATTGGTGTTGTAAAATTAATGGGGCGTTACAGTGgtaagcttcattcattcctctgat---aattttcaacttaag----ttccata-catatgttgaatgctgacctttg-----tcacttactttttctttcatgacatcttcct----------------------------
||||| ||||| |||||||||||||||||| | ||||||||||||||||||||  || | |||||  |||| || || ||| | ||||| ||||||||||||||  |||   |||| |||  ||   |   |||   |  ||    ||| | | ||| ||   |     || ||||      | | | | |||| | |   ||  |      |                            
GCTGTGGAAGAAGCACAACGAGCAATCAATGCAGCTCATGTGGAAGCAGAAAGTACTCATAATGGTGTTGGGGTGGTCAAACTCATGGGTCGTTACAGTGgtaatgttctgacattactcgaatcgaaccattctgttgcagacttttctacaacatttgacaatgatagaactttacatgatgattgagttttccatgtttgggaatcaaattatttattgatgcggttcatgtgtgcag

upper sequence: GLYMA13G42990.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S69_13V6.1 (Physcomitrella patens), 5'ss of exon 9
GCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCTGAGAATGGAATTGGTGTTGTAAAATTAATGGGGCGTTACAGTGgtaa-gcttcattcattcctctgataatt--ttcaacttaagttccatacatatgttgaatgctgacctttg---tcactt--actttttctttcatgacatcttcct--------------------------------------------------
|| || ||||| |||||||||||||||||| | |||||||||||||| || ||  || | |||||  | || || || ||| | ||||| ||||| || ||||| |||       |     || | | |  | ||| |     |   ||| | || | ||   | ||  |||   ||| |   |  || || || ||||    |   |                                                  
GCCGTGGAAGAAGCACAACGAGCAATCAATGCAGCTCATGTGGAAGCTGAGAGTACTCATAATGGTGTGGGGGTGGTCAAACTCATGGGTCGTTATAGCGgtaatgctctgactctgtacatgtttactaatccaattctgtgtttttac-tttggttaagatttacagttgaattcaataggaacttgtcattgatgatcgttggatttcggatgattccaaatgaacgtattcactgacacgattcatgggtgcag

upper sequence: GLYMA13G42990.1 (Glycine max), 5'ss of exon 9
lower sequence: PP1S282_45V6.1 (Physcomitrella patens), 5'ss of exon 9
GCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCTGAGAATGGAATTGGTGTTGTAAAATTAATGGGGCGTTACAGTGgtaagcttcattcattcctctgataattttcaacttaagttccatacatatgttgaatgctgacctttgtcacttactttttctttcatgacatcttcct---------------------------------
||||||||||| ||||| || ||||||||| |||| ||||||||||| || ||   | | ||||| ||||| || || ||  | ||||| || || || |||  |   | || | |||| ||  ||   ||| |  |   || |  |||  | ||| |         |||  || | | ||||  | |   || || |                                   
GCTGTTGAAGAAGCACAGCGCGCAATCAATGCTGCCCATGTGGAAGCTGAGAGTATTCACAATGGCATTGGGGTGGTCAAGCTCATGGGACGCTATAGCGgtgggacgcctttaatcctgtgg-aaacatcagcacatcctctaaccat-cgctgagt-taattagatgtttctcaatgtttccctgagatcaactgctaccacttatactaatttcacaccgtttggtgcag