Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGgtatgtgtcattttattttatattcttgggctttgagattcaattatttgagctgttgaaggttttgtgcag

Basic information

species Glycine max
transcript GLYMA13G42890.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42890.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g02670.t01 (Vitis vinifera), 5'ss of exon 9
GATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGgtatgtgtcattttattttat----attcttgggctttgagattcaattatttgagctgttgaaggttttgtgcag
||||||||| || ||||| || | ||| || ||||| || || ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  | |  | |||    | |  |   ||       |  ||  ||| ||| | |||    ||  || ||
GATTAAATTTCTTCTAAAGCTCAAGGCGCCACGCATTGTTTACGTCTCATGTAATCCTGCCACATGTGCACGCGACCTTGATTACCTTTGTCATGGTGTGgtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208200376|gb|GD996893.1|GD996893
EST:     GCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTG                         GAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTT
genomic: GCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGgtatgtgtca ... ttttgtgcagGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTT
EST: gi|120494560|gb|EH222727.1|EH222727
EST:     GCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTG                         GAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTT
genomic: GCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGgtatgtgtca ... ttttgtgcagGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTT
EST: gi|51338314|gb|CO982180.1|CO982180
EST:     GCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTG                         GAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTT
genomic: GCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGgtatgtgtca ... ttttgtgcagGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTT