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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATGGCAGGCATTCAAATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAGgtatgtcatctgatttatgttgttttgtgcaatagaggttacttttccttttaaagaagccgaaagcaataaattagcagtgatgtggtattataagttt...

Basic information

species Glycine max
transcript GLYMA13G41580.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41580.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 5'ss of exon 9
TAAATGGCAGGCATTCAAATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAGgtatgtcatctgatttatgttgttttgtgcaatagaggttacttttccttttaaagaagccgaaagcaataaattagcagtgatgtggtattataagttt----------
 ||||||||||| |||||| | ||| | ||||||||||||||||| |||||||| |||||||||||||||||||||   |   ||  || ||  |||   ||  |      |||  |   ||||||   |||||| | |  |     || | |   ||  | | | ||          
CAAATGGCAGGCCTTCAAACTGGCAACTCTTTCTGGCTTTGCTGAGCCCCTGGGTGTTATAATTGTAGgtatgtca---gtcctaccttattgcgtgttctaatg------tttgatgcaaaagaaagtgaaagccacatttctttggt-aggaaataggaaatgcttctgaggtatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323380|gb|FK017081.1|FK017081
EST:     ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAG                         CCTATCTATTCCCTAGCAGCTTAAGTTCTGAGATTCTGG
genomic: ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAGgtatgtcatc ... ctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGG
EST: gi|7029691|gb|AW459474.1|AW459474
EST:     ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAG                         CCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTG
genomic: ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAGgtatgtcatc ... ctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTG
EST: gi|192300847|gb|FG991169.1|FG991169
EST:     ATTAGCATCACTTTCTGGCTTTGCTGA-CCCCTGGGAGTTATAATTGTAG                         CCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGA-GGTTTACTTG
genomic: ATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAGgtatgtcatc ... ctcattgtagCCTATCTATTCCCTAGCAGCTTAAGTCCTGAGATTCTGGAAGGTTTACTTG