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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGATTTCTGTTTCTACAAAGGAAATGTGGTGGAGCACTTGGATGGTCACACTGACATTATTCACAAACAACTATTTAGCGATTGGTTGCCTTGgtaaagaaccaagcctttagtgctgatcatgtaccactacttgttttaaggttctactagtctatttagaattaaaaaaatatttttttcatataatgttttacag

Basic information

species Glycine max
transcript GLYMA13G40010.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40010.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G28320.1 (Arabidopsis thaliana), 5'ss of exon 9
ATGGGATTTCTGTTTCTACAAAGGAAATGTGGTGGAGCACTTGGATGGTCACACTGACATTATTCACAAACAACTATTTAGCGATTGGTTGCCTTGgtaaagaaccaagcctttagtgctgatcatgtaccactacttgttttaaggttctactagtctatttagaattaaaaaaatatttttttcatataatgttttacag
||||||||||||||| ||  |||| | |||||| || ||  | |||||||||||||| || || |||||||| ||||  ||||||||||| |||||||     ||  | | ||  |  | ||    ||     |  |||| ||||   |    |  | || | | |                                    
ATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTGgtctgctactcaactttctgc-cagagttagtgtttttgtttgtcttaatactaacatgctgtagtaacag-----------------------------------

upper sequence: GLYMA13G40010.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 5'ss of exon 9
ATGGGATTTCTGTTTCTACAAAGGAAATGTGGTGGAGCACTTGGATGGTCACACTGACATTATTCACAAACAACTATTTAGCGATTGGTTGCCTTGgtaaagaaccaagcctttagtgctgatcatgtaccactacttgttttaaggttctactag-tctatttagaattaaaaaaatatttttttcatataatgttttacag
|||||| |||||||| ||||| |||||||||||||||||| | |||||||| || || ||| ||||||| ||  ||| ||| |||||||| ||||||| | ||  ||| ||||||    || | ||   | | || |  | | |   || |   || |||   || |||  |    || || ||     || ||   || |||
ATGGGACTTCTGTTTTTACAAGGGAAATGTGGTGGAGCACCTTGATGGTCATACGGATATTGTTCACAAGCAGTTATATAGAGATTGGTTACCTTGgtta-gattcaaaccttta----tgtttata-gcaaatattcatgtcacaattttctaagatctccatataatacatgtcattttattgaatcatcataccttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208271826|gb|GE068706.1|GE068706
EST:     ACAAACAGCTATTTAGCGATTGGTTGCCTTG                         GGGAATGAAACGAAGAGATCTCTTGTTGCGGCGTTATTGGAGGAGAGAAGA
genomic: ACAAACAACTATTTAGCGATTGGTTGCCTTGgtaaagaacc ... tgttttacagGGGAATGAAACGAAGAGATCTCTTGTTGCGGCGTTATTGGAGGAGAGAAGA