1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGAAAAAATATGGTTTGGAGATCTCTCAACCTGGTCTTGAGCCTAATAATGGATTGACATGGGAGATGACAAAAAGGAGGGGTGACAAAGAAGTTCACATgtattcctttgcccttcctttctttcttaactttagtcattgatgtaataaggtgttttttttcgtatcatgacttcagatgtgttcttaagtcttgacacatttttgtgtgtgttggcaaatag
species | Glycine max |
transcript | GLYMA13G39990.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GATTGACATGGGAGATGACAAAAAGGAGGGGTGACAAAGAAAGTTCACAT GGTGACAGAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTGEST: gi|13181457|gb|BG352797.1|BG352797
genomic: GATTGACATGGGAGATGACAAAAAGGAGGGGTGACAAAG-AAGTTCACATgtattccttt ... tggcaaatagGGTGACAGAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTG
EST: GGATTGACATGGGAGATGACAAAAAGGAGGGGTGACAAAGAAGTTCACAT GGTGACAGAAGAGAAACCAAGCTGGTGTAGTGATCCACATTTGCCTCCTTGEST: gi|18848780|gb|BM567892.1|BM567892
genomic: GGATTGACATGGGAGATGACAAAAAGGAGGGGTGACAAAGAAGTTCACATgtattccttt ... tggcaaatagGGTGACAGAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTG
EST: GGATTGACATGGGAGATGACAAAAAGGAGGGGTGACAAAGAAGTTCACAT GGTGACAGAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTG
genomic: GGATTGACATGGGAGATGACAAAAAGGAGGGGTGACAAAGAAGTTCACATgtattccttt ... tggcaaatagGGTGACAGAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAAAAATATGGTTTGGAGATCTCTCAACCTGGTCTTGAGCCTAATAATGGATTGACATGGGAGATGACAAAAAGGAGGGGTGACAAAGAAGTTCACATgtattcctttgcccttcctttctttcttaactttagtcattgatgtaataaggtgttttttttcgtatcatgacttcagatgtgttcttaagtcttgacacatttttgtgtgtgttggcaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT