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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagtagggcaaacccttatattagtacattaaaagttaaaacatccacccttgatatgaaaactattcacattaagtatttttataaagtagtttcattatgctcattgttcatacaatactaaaaaagttatttttagaattagcgtagttttcactggtggcttcttttaaag

Basic information

species Glycine max
transcript GLYMA13G36570.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 10
GTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagtagggcaaacccttatattagtacattaaaagttaaaacatccacccttgatatgaaaactattcacattaagtatttttataaagtagtttcattatgctcattgttcatacaatactaaaaaagttatttttagaattagcgtagttttcactggtggcttcttttaaag
 |||| |||||| |||||||||| ||||| || |||||||| ||  | |||||||||||||| ||||  || || | || ||| || |||         | ||   |||||    ||  |  || || ||| |   ||      ||        | | | | |||||  ||  | | | || ||| |                                                                          
ATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTTCTCCAATATTCACCAAGTCTACGCTGCACTGCTgtgagttttctt--tcgtttgcttagttttatattatctataa-atctattgttttcgctaagcgctaggataatgattatttacatggatttgctt-atttta-------------------------------------------------------------------------

upper sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 10
GTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagta-gggcaaacccttatattagtacattaaaagttaaaacatccacccttgatatgaaaactattcacattaagtatttttataaagtagtttcattatgctcattgttcatacaatactaaaaaagttatttttagaattagcgtagttttcactggtggcttcttttaaag
||||| |||||| | ||||||||||||||||| ||||| || ||| | ||||| |||||||| || |  || || | || ||| || ||||    |   |    || |||        ||   || || |   |   || |       |||  |||||  | |  |  |  ||||         || |                                                                          
GTTTTCCACAAGAGGATGCCTCCTGAAGCAATAGACCTCGCTTCACGCCTTCTTCAATATTCACCGAGTCTCCGCTGCACTGCTgtgagtatattcttgctgcaattttaagtagcagaacagtagaaaagtgatttttcact-----actgctcacagcaggggtact-gtaaaacgccccttttctta------------------------------------------------------------------------

upper sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 9
lower sequence: AT2G30980.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagtagggcaaacccttatattagtacattaaaagttaaaacatccacccttga--tatgaaaactattcac-attaagtatttttataaagtagtttcattatgctca-ttgttcatacaatactaaaaaagttatttttagaattagcgtagttttcactggtggcttcttttaaag
||||| |||||||| |||||||| ||||| ||||||||||||||  ||||||| ||||| || ||||  || |||| || ||| ||  |||   | || ||   || |      ||||  |||| |        |  ||   | |    || || |||  || | |       | || |  | |  ||   || | |||||  |          ||                                                 
GTTTTCCACAAGCGGATGCCTCCGGAAGCCATTGACCTTGCATCTCGGCTTCTTCAATACTCACCAAGTCTACGTTGCACTGCGgttggtatttctaaaccaagtact-----cttaattgttacagtggttctctctggcttctttggaccatacactgttcaatgaaggagtgaaatgttgtttttcaactgacttgtttgtttgccgtctgaag------------------------------------------------

upper sequence: GLYMA13G36570.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G06390.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagtagggcaaacccttatattagtacattaaaagttaa-aacatccacccttgatatgaaaactattcacattaagtatttttataaagtagttt--cattatgctcattgttcatacaatactaaaaaagttatttttagaattagcgtagttttcactggtggcttcttttaaag
|||||||| || || |||||||| |||||||| |||||||||||  ||||||| |||||||| ||||  || || | || ||| || ||||   |   |  || | |     |   |  |||    |      || |||  | ||||   |       ||   ||    ||  |   | |||  ||||   ||  || |   |  | |  ||                                                    
GTTTTTCATAAACGGATGCCTCCAGAAGCAATAGACCTTGCATCTCGGCTTCTTCAATATTCACCAAGTCTACGCTGCACTGCGgtcagtatctccctcttttttttataatcgaaagtagtcgtcagtgataactctt--tttgaatcttccaagtgttggataaagctaagattcattttaacatttgtcttgttctctgtctatttttag---------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298181881|gb|HO026056.1|HO026056
EST:     ACCTTGCATCAAGGCTTCCCCAATATTCCCCAAAACTTCGTTACAGTGCA                         GTGGAAGCAATGGCACATCCTTTCTTTGAGGAGCTTCGCGAGCCCAATGCC
genomic: ACCTTGCATCAAGGCTTCTCCAATATTCCCCAAAACTTCGTTACAGTGCAgtaagtaggg ... tcttttaaagGTGGAAGCAATGGCACATCCTTTCTTTGAGGAGCTTCGCGAGCCCAATGCC