Sequence
atgc intronic sequence ATGC exonic sequenceAGAATGGCGTGCTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGTTCCATTGTATTCAAGGAACCACGCTTTGTTGAGTATTTCCGCCTGgtaaggaccacatttagtaaacaacttaattaagtacttattcattaagttcttatcagatgacatgagaccttattcaaaaacttgattgtgaaacttg...
Basic information
species | Glycine max |
transcript | GLYMA13G34560.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os08g27840.1 (Oryza sativa), 5'ss of exon 8
AGAATGGCGTGCTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGTTCCATTGTATTCAAGGAACCACGCTTTGTTGAGTATTTCCGCCTGgtaaggaccacatt---tagtaaacaacttaatta-agtactt------attcatt--aagttcttatcagatgacatgagaccttattcaaaaacttgattgtgaaacttg-----------------------
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AGAATGGCGTGCTCTGCTTGATGAGATGGCTGTGGTGGCTACAAAGGAATACCGGTCCATCGTCTTCCAGGAACCACGCTTTGTCGAGTATTTCCGCCTTgtgagtgttttgtttcttcataatcatcagacttggaacatttcatataatgcatttaaggcacttagctaaacattgttcatttcaggcaaaacctttgtaaattaattttctttacatttttcatgaaatcag
upper sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 5'ss of exon 10
AGAATGGCGTGCTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGTTCCATTGTATTCAAGGAACCACGCTTTGTTGAGTATTTCCGCCTGgtaaggaccacatttagtaaacaacttaattaagtacttattcattaagttcttatcagatgacatgagaccttattcaaaaacttgat-tgtgaaacttg--
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AGAATGGCGTGCTTTGATGGATGAAATGGCCGCTGTTGCTACAAAAGAATACCGGTCCATTGTCTTCCAAGAGGCACGATTTGTTGAATATTTCCGCCTTgtaagtattcttttt--ttaataacttcagtttttgttttatgcttataaaaatact-gttcattttaaaccttttatgctgtcttgaaatagctatcttgaa
upper sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 8
AGAATGGCGTGCTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGTTCCATTGTATTCAAGGAACCACGCTTTGTTGAGTATTTCCGCCTGgtaag-gaccacatttagtaaacaacttaattaagtacttattca--ttaagttcttatcagatgacatgagaccttatt----caaaaacttgattgtgaaacttg
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AGAATGGCGTGCTTTGATGGATGAGATGGCTATCGTCGCCACAAAGGAATACCGGTCAATCGTATTTGAGGAACCGCGCTTTGTTGAATACTTCCGCCTTgtaagtgttcacttttctttgctcgtgttttctcttttctagacaccttcacttgtctttatattgtttgtgcaattaccactatgagagcttggttgta-------
upper sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G473001_T01 (Zea mays), 5'ss of exon 8
AGAATGGCGTGCTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGTTCCATTGTATTCAAGGAACCACGCTTTGTTGAGTATTTCCGCCTGgtaaggaccacatttagtaaacaacttaattaagtacttattcattaagttcttatcagat---gacatgagaccttattcaaaaacttgattgtgaaacttg
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AGAATGGCGAGCCCTTCTTGATGAGATGGCAGTTGTGGCAACTGAGGAATATCGGTCCATTGTCTTCAAAGAGCCACGCTTTGTCGAGTATTTCCGCCTTgtaagtccttgatcccatcgattgccatacta--cagtaacataaaaagatgggggtagaccagtactggaggctccacctgagtggtgtctagagatacta-
upper sequence: GLYMA13G34560.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv19s0014g01390.t01 (Vitis vinifera), 5'ss of exon 8
AGAATGGCGTGCTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGTTCCATTGTATTCAAGGAACCACGCTTTGTTGAGTATTTCCGCCTGgtaaggaccacatttagtaaacaacttaattaagtacttattcattaagttcttatcagatgacatgagaccttattcaaaaacttgattgtgaaacttg
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AGAATGGCGTGCTCTTATGGACGAAATGGCTGTTGTTGCTACGGAGAATTATCGTTCAATTGTTTTCCAAGAACCTCGATTTGTTGAGTATTTCCGCCTTgtaagtatcctgcaatatctttgactctatttaa-accaagtaa--aggctgttaccattttaatgatcgtcttgtgcta-----tgattgtag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10236260|gb|BE805148.1|BE805148EST: ACCGTTCCATTGTATTCAAGGAACCACGCTATGTTGAGTATTTCCGCCTG GCTACACCGGAGTTGGAGTATGGAACGATGAACATTGTAAGT
genomic: ACCGTTCCATTGTATTCAAGGAACCACGCTTTGTTGAGTATTTCCGCCTGgtaaggacca ... tttcatgtagGCTACACCGGAGTTGGAGTATGGAAGGATGAACATTGGAAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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AGAATGGCGTGCTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGTTCCATTGTATTCAAGGAACCACGCTTTGTTGAGTATTTCCGCCTGgtaaggaccacatttagtaaacaacttaattaagtacttattcattaagttcttatcagatgacatgagaccttattcaaaaacttgattgtgaaacttg
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