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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCTGCTTTGGGCATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAGgtaaattagtgcaagaagccattatgtccacaatatggtaccaaagtcttcagttttccattactaatgatcacaaattgttccaaatttgtag

Basic information

species Glycine max
transcript GLYMA13G33920.1
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31463649|gb|CD405677.1|CD405677
EST:     ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAG                         TGGAGCTACAGAGTTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTG
genomic: ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAGgtaaattagt ... aaatttgtagTGGAGCTACAGAGT-ATAATCCTAACCTCCTCAAATACTCTTGCCAGATTG
EST: gi|31475937|gb|CD417965.1|CD417965
EST:     ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAG                         TGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
genomic: ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAGgtaaattagt ... aaatttgtagTGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
EST: gi|8825720|gb|BE209386.1|BE209386
EST:     ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAG                         TGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
genomic: ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAGgtaaattagt ... aaatttgtagTGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
EST: gi|22931171|gb|BU548310.1|BU548310
EST:     ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAG                         TGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
genomic: ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAGgtaaattagt ... aaatttgtagTGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
EST: gi|31469225|gb|CD411253.1|CD411253
EST:     GTCACTTCCAAGTTTTAG                         TGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
genomic: GTCACTTCCAAGTTTTAGgtaaattagt ... aaatttgtagTGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
EST: gi|31472409|gb|CD414437.1|CD414437
EST:     ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAG                         TGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
genomic: ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAGgtaaattagt ... aaatttgtagTGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
EST: gi|151404895|gb|EV274709.1|EV274709
EST:     ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAG                         TGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
genomic: ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAGgtaaattagt ... aaatttgtagTGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
EST: gi|151397360|gb|EV267233.1|EV267233
EST:     ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAG                         TGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA
genomic: ATTGGCCACTGGATGGGCCCAACAACGAGAATGTCACTTCCAAGTTTTAGgtaaattagt ... aaatttgtagTGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGA