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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGTTAGAATATCCTCTTTATTGACATCTCGGCATCTCTCTCAAAGACGAATAAGGCTTCCTGTCAGGAAATATCATTCTAAGAATGATGGTCCAAAGgtgagtatttgtagctctatatatgatcaatctaggtttctagtgacatgatctttcatggagctaaatatggtatgccttaactaccttgttctcttgcag

Basic information

species Glycine max
transcript GLYMA13G33910.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33910.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0025g03150.t01 (Vitis vinifera), 5'ss of exon 8
TCCTGTTAGAATATCCTCTTTATTGACATCTCGGCATCTCTCTCAAAGACGAATAAGGCTTCCTGTCAGGAAATATCATTCTAAGAATGATGGTCCAAAGgtgagtatttgtagctctatatatgatcaatctaggtttctagtgacatgatctttcatggagctaaatatggtatgcctt--aactaccttgttctcttgcag
||||||||||||||| || |||||||| ||||| || ||||||||||| || || ||| | ||||  |||||||||||| |||| ||||||| |||||||||||| ||   ||  | | | ||  |  || ||   |||  ||   ||  || | |    ||   ||   |    | || |  ||||    |||| | |  |||
TCCTGTTAGAATATCATCCTTATTGACTTCTCGACACCTCTCTCAAAGGCGGATTAGGTTGCCTGCAAGGAAATATCATCCTAAAAATGATGCTCCAAAGgtgag-ataattatttttttttaaaaa-aaccttaatttgaagcttcaaaatgtctggctgaaaaaatgctttcttaccatgaaacttaactgttgtat-acag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295400|gb|FG987014.1|FG987014
EST:     GAATAAGGCTTCCTGTCAGGAAATATCATTCTAAGAATGATGGTCCAAAG                         GTTGCATTCTTCAGTGATGATGAGGATACTCCAACGACACCCAAGGCTGAT
genomic: GAATAAGGCTTCCTGTCAGGAAATATCATTCTAAGAATGATGGTCCAAAGgtgagtattt ... tctcttgcagGTTGCATTCTTCAGTGATGATGAGGATACTCCAACGACACCCAAGGCTGAT
EST: gi|7326572|gb|AW620370.1|AW620370
EST:     GAATAAGGCTTCCTGTCAGGAAATATCATTCTAAGAATGATGGTCCAAAG                         GTTGCATTCTTCAGTGATGATGAGGATACTCCAACGACACCCAATGCTGAT
genomic: GAATAAGGCTTCCTGTCAGGAAATATCATTCTAAGAATGATGGTCCAAAGgtgagtattt ... tctcttgcagGTTGCATTCTTCAGTGATGATGAGGATACTCCAACGACACCCAAGGCTGAT