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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgtactgtgttccttttaccaatttttatattcacaaaaactgcctgaattttgagacattattatttagcttctctgaatcctttgaacag

Basic information

species Glycine max
transcript GLYMA13G32030.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G32030.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os08g04630.1 (Oryza sativa), 5'ss of exon 8
TTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAA----Ggtactgtgttccttt------taccaatttttatattcacaaaaac----tgcctgaattttgagacat------tattatttagcttctctgaatcctttgaa--cag
|||| ||  | ||||| |||||||| ||||| ||||| ||||| |||||| | || |||||||| ||||  || ||||| |||||||||||||| ||||     ||  | | |||| ||      |  |||   |||| ||   |  |      ||||   ||||||   |||      |  | | ||  | ||||   | || ||||  |||
TTGCCCCACTAGGAGGTGAGCAGACTGCTGCACAGCTCCCTGGTGATTGGATCTCCATTGGCCACAGCACACAGTGGCTCTGGTATTCTGTCTACGCAACgtaagtgttctcttccatttcagagtgacaaaggttatgttgctatcactcctgtgcccccattttggttcatctatgctggtgtctaa-tgctcttttttctctgaattcag

upper sequence: GLYMA13G32030.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os06g47000.2 (Oryza sativa), 5'ss of exon 9
TTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgtactgtgttccttttaccaatttttatattcacaaa-aactgcctgaattttgagacattattatttagcttctctgaatcctttgaacag--------------
|||| || ||||| ||||||||  | |||||  |||| || || || |||||||| || |||||||||| ||| ||||| ||||| ||||| |||||||||||      | || | | ||        || | | |  | ||| ||||| | |   |      | | |     |||||||    |  | ||               
TTGCACCCTTGGGTGGAGAGCAAGCTGCTGCAGAGCTCCCAGGCGACTGGGTTTCCATGGGCCATAGCACTCAGTGGCTCTGGTACTCTGTATATGCAAGgtaagaacctgctgtcagcagcaaggccatcctctaccatctgtctgaactctactat----ctgtctgaa--ctctgaagaaatcaaccatggcatctcattcta

upper sequence: GLYMA13G32030.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G090487_T01 (Zea mays), 5'ss of exon 9
TTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgtactgtgttccttttaccaatttttatattc-acaaaaactgcctgaattttgagacattattatttagcttctctgaatcctttgaacag
| |||||  |||| |||||||| || |||  |||  | || || || |||||     |||| || ||||  ||||||||||||||||||||||||||||||||   | ||  |     |  |   |||  || ||   |  |  || | ||    |    | ||  ||  | | |     |  |    ||||
TCGCTCCACTGGGTGGAGAGCAAACTGCTTACCAATTGCCAGGTGACTGGGTACATGTTGGACACAGCACCCAATGGCTGTGGTATTCTGTCTATGCAAGgtatgatcttgttccggtccctcagtatgctctaccttacatatct-agttgaatgctggttttgattgccgtttgctcttgttcaatacag

upper sequence: GLYMA13G32030.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G563190_T01 (Zea mays), 5'ss of exon 8
TTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgtactgtgttccttttaccaatttttatattc-acaaaaactgcctgaattttgagacattattatttagcttctctgaatcctttgaacag----
| |||||  |||| |||||||| || |||   ||  | || || || |||||     |||| || ||||  ||||||||||||||||||||||||||||||||  || ||  |     |  |   ||| ||| |    |  || ||     ||||    || || |     |  | ||      || || |     
TCGCTCCACTGGGTGGAGAGCAAACTGCTTATCAATTGCCAGGTGACTGGGTGCATGTTGGACACAGCACCCAATGGCTGTGGTATTCTGTCTATGCAAGgtatggtcttgttacggtccctcagtatgttccatcttacatgtctag---ttgaacgcttgttttgatagtcgtttgttcttgttaaatatacag

upper sequence: GLYMA13G32030.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G05020.2 (Arabidopsis thaliana), 5'ss of exon 10
TTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgt---actgtgttccttttaccaattttt-------atattcacaaa--aactgcctgaattttgagacattattatttagcttctctgaatcctttgaacag
|||| ||  ||||||| ||||| || || || || ||||| |||||||||||||| ||||| || ||||| || ||||| ||||| || ||||| || ||||   | ||  | | | ||   ||  |||       | || ||||||  ||     | |||||| |    |||   |  |   | | || ||  || ||||||
TTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGgttaaaatgcttccttgttctgaaaattttaaaatgaaatccacaaaggaatgttttcaatttttac---ttaaggtagaaaatgtttggat--ttggaacag

upper sequence: GLYMA13G32030.1 (Glycine max), 5'ss of exon 9
lower sequence: AT4G21490.1 (Arabidopsis thaliana), 5'ss of exon 9
TTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgtactgtgttccttttaccaatttt-----tatattcacaaaaactgcctgaattttgagacattattattta-gcttctctgaatcctttga-acag
||||||| || ||||| || || || || || || ||||| ||||| |||||||| || || || |||||||||||||||||||| || || || || |||||  ||        ||   |  |      | |||||| |  |  |   |   ||||   |  || ||  |||    | | ||  |    | | ||||
TTGCTCCATTAGGAGGCGAACAAACCGCGGCGCAACTTCCAGGAGACTGGGTTTCGATAGGACACAGCAGTCAATGGCTGTGGTACTCCGTTTACGCTAGgtaacgttaaatgactaatgaaatacgaaatgtattcatatgatttttgtatttttttgtaactttttggttacaagtttttgtttttaataatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16343648|gb|BI969243.1|BI969243
EST:     GTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAG                         TAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAG
genomic: GTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgtactgtgtt ... ctttgaacagTAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAG
EST: gi|254326478|gb|GR841070.1|GR841070
EST:     GTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAG                         TAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAG
genomic: GTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgtactgtgtt ... ctttgaacagTAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAG
EST: gi|254326479|gb|GR841071.1|GR841071
EST:     GTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAG                         TAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAG
genomic: GTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgtactgtgtt ... ctttgaacagTAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAG
EST: gi|151408246|gb|EV278054.1|EV278054
EST:     GTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAG                         TAAGCAAGTAAGCTGGCGTACAAGAGTGTTAGTAGTTTCAGACTGGACAAG
genomic: GTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgtactgtgtt ... ctttgaacagTAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAG