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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATTAATTAACAACACATCCTTTAGGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatcttattgctttgtttcttgtgtgcatcagtttatatgctttattcacgtgatatttctgtcccgttattactgacatgtgctaattattataaaag

Basic information

species Glycine max
transcript GLYMA13G29410.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29410.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv04s0008g00770.t01 (Vitis vinifera), 5'ss of exon 10
CATATTAATTAACAACACATCCTTTAGGGTCTTGATGGTGCTCGGGTGGAGAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatcttattgctttgtttcttgtgtgcatcagtttatatgctttattcacgtgatatttctgtcccgttattactgacatgtgctaattattataaaag
                           ||| ||||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||| ||||||||||||||| | |  | | | |||  |  ||| | |    || |   |   | || |   |    ||||     |   ||  | |  | ||||   ||| |         
---------------------------GGTATTGATGGGGCTCGGGCGGAGAAGATTCTTGACATGGCTTCTATCACCCTCAACAAGAATTCAGTGCCTGgtaa-acttcaatccttcatcccttttatattccactgactcccccttttctccaccttatt-----ctacttgctcc--aaatgttaaaatcacag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209700551|gb|BW670390.1|BW670390
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209725263|gb|BW672738.1|BW672738
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|20075616|gb|BQ094399.1|BQ094399
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|213606991|gb|DB974384.1|DB974384
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|18038805|gb|BM307099.1|BM307099
EST:     CTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: CTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|213603861|gb|DB982161.1|DB982161
EST:     AAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCAACAGCAA
genomic: AAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|213593328|gb|DB975696.1|DB975696
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|193514366|gb|FK467896.1|FK467896
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209725542|gb|BW677842.1|BW677842
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209710250|gb|BW681112.1|BW681112
EST:     CCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: CCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|37995170|gb|CF806759.1|CF806759
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|15286064|gb|BI469955.1|BI469955
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|214004065|gb|DB984971.1|DB984971
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|213594045|gb|DB983197.1|DB983197
EST:     TGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCAACAGCAA
genomic: TGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|209727332|gb|BW651586.1|BW651586
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|19052654|gb|BM731321.1|BM731321
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|214008826|gb|DB988277.1|DB988277
EST:     AAAATTCTTGAC-TGCGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: AAAATTCTTGACTTG-GCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|6454780|gb|AW185463.1|AW185463
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
EST: gi|302141299|gb|HO212175.1|HO212175
EST:     GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTG                         GTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA
genomic: GAAAATTCTTGACTTGGCTTCTATAACCCTCAACAAAAATTCAGTGCCTGgtgagatctt ... attataaaagGTGATAAGAGTGCCCTAGTTCCAGGAGGCATTCGCATTGGGGCACCAGCAA