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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAGATTTTTTATTAACTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATgtaagtcagtctggacttcgctggtgatttcatgctatcagtttaactatttttttgtgcactcttgctcattctgggtgttcaaatcattctatcccag

Basic information

species Glycine max
transcript GLYMA13G24370.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24370.1 (Glycine max), 5'ss of exon 9
lower sequence: AT1G28420.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTTGGAGATTTTTTATTAACTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATgtaagtcagtctggacttcgctggtgatttcatgctatcagtttaactatttttttgtgcactc--ttgctcattctgggtgttcaa--atcattctatcccag
|||||||||||  | ||    ||| |||||||||| ||  ||||| ||||||| || ||||||||| |||| || |||||||||||||||||||  |||  | |   |   |    |  |       |||  |   || |||  | || |   ||| || | ||  || ||  |  |  || ||||   ||
GTTTGGAGATTCCTGATATCATTTTCTGATGTTCTTGACCTATGGCCTTTTACACTGGATGAGTTTATTCAGGCTTTTCATGACTATgtaagtcgctctttagt--acctatagcctgttttctcgtgttctatagttgtttctttcatttcattgttcgtgctctgtatttgataaagatcctattgtag

upper sequence: GLYMA13G24370.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0003g00290.t01 (Vitis vinifera), 5'ss of exon 9
GTTTGGAGATTTTTTATTAACTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATgtaagt---cagtctggacttcgctggtgatttcatgc-tatcagtttaactatt-tttttgtgcactcttgctcattctgggtgttc--aaatcattcta-tcccag
|| ||||||||||| || |  ||||| ||||| ||  |||||||| |||||||||| ||||||||||| ||||| |||||||||||||| |||   |  |  ||  || | |    |||| |||| ||| | ||||| |  |  |||||    |||||   | ||     | ||   | | |||  || || |||
GTCTGGAGATTTTTAATCACTTTTGCCGATGTGCTTCAGTTATGGCCTTTTACTCTTGATGAGTTTGTCCAAGCTTTTCATGACTATgtgagttctccatgaggtttttgttttcaattttatgcatattaatttaatttctgcttttgccttctctttgccttttcacatatttctataccatattaatctcag