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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACGGAATATTTATCTAGgttgtactcctctacctgttcctcatccctttccctaaaagagggaagtttttcaaggctataggattataggatattttgaccttgacattctaagagttcttgacctaagtgcag

Basic information

species Glycine max
transcript GLYMA13G21480.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21480.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G059671_T01 (Zea mays), 5'ss of exon 8
TTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACGGAATATTTATCTAGgttgtactcctctacctgttcctcatccctttccctaaaagagggaagtttttcaaggctatagg-attataggatattttgaccttgacattctaagagttcttgacctaagtgcag
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TTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgt---gtgtccttactt--tctgaatgccttt---tgaaatatactatctgtgcacctctagagttagtccaaggt-tccagaacttaaccttttt---gtttt----ctatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820117|gb|BE555627.1|BE555627
EST:     GCAGTCACTCAGCCTCCTAACTTATCAATTGTCACGGAATATTTATCTAG                         GGGTAGCTTATATAGGCTTTTGCATAGATCTGGCGCCAAAGAAGTATTGGA
genomic: GCAGTCACTCAGCCTCCTAACTTATCAATTGTCACGGAATATTTATCTAGgttgtactcc ... ctaagtgcagGGGTAGCTTATATAGGCTTTTGCATAGATCTGGCGCCAAAGAAGTATTGGA
EST: gi|19271170|gb|BM887426.1|BM887426
EST:     GCAGTCACTCTTCCTCCTAACTTATCAATTGTCACGGAATATTTATCTAG                         GGGTAGCTTATATAGGCTTTTGCATAGATCTGGCGCCAAAGAAGTATTGGA
genomic: GCAGTCACTCAGCCTCCTAACTTATCAATTGTCACGGAATATTTATCTAGgttgtactcc ... ctaagtgcagGGGTAGCTTATATAGGCTTTTGCATAGATCTGGCGCCAAAGAAGTATTGGA