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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTGTGGCATTGTAGGGGGAATTGTTGGAGGCCTACTTGGTTCTGGAGGTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtatatagtatatatgctctctcaattgagctaacactagttaaattaggagcataattctagaaacttaactttaaaagaatatttgatcataatcttgtag

Basic information

species Glycine max
transcript GLYMA13G21310.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193386378|gb|FK350382.1|FK350382
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|208108275|gb|GD901625.1|GD901625
EST:     GTGGATTTGTTTTGGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTCTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|193364959|gb|FK333216.1|FK333216
EST:     TGGGTTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: TGGG-TTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|193689584|gb|FK628827.1|FK628827
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|207707045|gb|GD689189.1|GD689189
EST:     AGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: AGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|193495500|gb|FK461496.1|FK461496
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACGGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|193445565|gb|FK412656.1|FK412656
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|208256299|gb|GE057058.1|GE057058
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|192317082|gb|FK007849.1|FK007849
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|208295832|gb|GE092207.1|GE092207
EST:     TTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: TTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|193337052|gb|FK302432.1|FK302432
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|193556361|gb|FK513600.1|FK513600
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|193494884|gb|FK460618.1|FK460618
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|193462922|gb|FK427365.1|FK427365
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|208112947|gb|GD910586.1|GD910586
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCACCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|193617270|gb|FK567488.1|FK567488
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|192317081|gb|FK007848.1|FK007848
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|14126025|gb|BG790463.1|BG790463
EST:     GTGGGTTTGTTTTAAGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|207766033|gb|GD735534.1|GD735534
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|193481968|gb|FK444399.1|FK444399
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|208245155|gb|GE037013.1|GE037013
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
EST: gi|207765830|gb|GD735471.1|GD735471
EST:     GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAG                         GTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA
genomic: GTGGGTTTGTTTTAGGACCTCTTCTTCTAGAGATTGGTGTCATTCCTCAGgtaaagtata ... aatcttgtagGTTGCTAGTGCTACAGCAACATTTGTGATGATGTTTTCATCATCTTTGTCA