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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtattcgagtttcttatattcttgttttgtgtagcttgttgtcggccacttgtcgtgttcaatttttctcattttatcttttgcatttgtag

Basic information

species Glycine max
transcript GLYMA13G18670.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 9
CAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtattcgagtttcttatattcttgttttgtgtagcttgttgtcggccacttgtcgtgttcaatttttctcattttatcttttgcatttgtag
 |  || || |||||||| ||  | ||| |||| ||||| |||| |   ||| | |||| ||||||||||||||||||||||||||| |||||||| |||||      |  || | | || | |  |   | |  |   | ||    | |||   |      || |||  ||  | | |||||||       
TAGTGGAGTAGAATGGGACAAATTATATGAAATAGAAGCAGCATATCAACCTCAAGTCACTGATGAGTTAGATACTCAGAATTTTGAGAAGTTTGAAGAGgt---taggggtcgtttcttttggcctaaaggaattcagtttcaataagttggtataaatg-ttattcctatggtgtgttttgcag------

upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 9
CAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtattcgagtttcttatattcttgtt----ttgtgt---agcttgttgtcggccacttgtcgt-gttcaatt--tttctcattttatcttttgcatttgtag
  |||||  |||||||||||  || ||||  |||||||||||||||||||| |||||||  ||||| |||||||||||||||||||||||||| || ||||||||    |    |||  | ||| |    |||||    | ||||||    |    ||   || | | |  |  ||| | |   ||| || ||  |||| ||
TGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTGAAAAGTTCGAAGAGgtattgatatgctctattcttttgctgatcttgtgccacaacttgtttggagttttttcatgttgcttatctactttttgagcctattttatgggtttgcag

upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 9
lower sequence: PP1S87_129V6.1 (Physcomitrella patens), 5'ss of exon 9
CAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgt-attcgagtttcttat-------attc--ttgttttgtgtagcttgttgtcggccacttgtcgtgttcaatttttctcattttatcttttgcatttgtag
||||||  |   |||||| | | | ||| ||||||| || || ||||  || || || || |||||||| ||||||||||||||||| || ||||| ||||| |   |   ||| |||       ||||  ||   ||    | |    | |  | ||||  | | |||       ||| ||  ||  |||   ||   |  
CAAAGGATTGCCATGGGAAAGGTTATATGAAATGGAGGCCGCTTTTAAACCGGAAGTGAAAGATGAGTTGGATACTCAGAATTTTGAGAAATTTGAAGAGgttaacagtccttcctatctagaacattcgtttacctttcaaatcagaatctttggcactcttagagttgttaaactctgatgataattttcaaatagtt--

upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 9
lower sequence: PP1S22_429V6.1 (Physcomitrella patens), 5'ss of exon 9
CAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtatt-cgagtttcttatatt-cttgttttgtgtagcttgttgtcggccacttgtcgtgtt---caatttttctcattttatcttttgcatttgtag-----
| | ||  |    ||||||||||| ||| | ||||| || || ||||  |||||||| || |||||| | || |||||||||||||| ||||| || ||||| |  |    |||||| |   |    | | | ||  ||  |||||||     ||  ||||    |  |      | | |   |  || || | | |     
CCATGGATTACCTTGGGATAAGCTGTATGAGATGGATGCAGCTTTTAAACCTGAGGTGAAAGATGAGCTGGACACTCAGAATTTTGAGAAGTTCGAAGAGgtctggcatccttcttacaccacccaatctatata--ttactgtcggcttgaggttatgttatgtaggtaggtgtactgtgaatcatggatatctggtactg

upper sequence: GLYMA13G18670.2 (Glycine max), 5'ss of exon 9
lower sequence: PP1S86_100V6.1 (Physcomitrella patens), 5'ss of exon 9
CAAAGGTGTTGAATGGGATAAGCTCTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtattcgagt-ttcttatattcttgttttgtgtagcttgttgtcggccacttgtcgtgttcaatttttctcattttatcttttgcatttgtag-------
| | ||  |    ||||||||||| ||| | ||||| || || ||||  || ||||| || |||||| | ||||||||||||||||| ||||| || ||||| | | |   ||| | |         | |  || |||      ||||    |   | |   | |  |||   ||   |      || | ||        
CCATGGATTGCCTTGGGATAAGCTGTATGATATGGAGGCAGCTTTTAAACCCGAGGTGAAAGATGAGCTGGATACTCAGAATTTTGAGAAGTTCGAAGAGgtttaccatcattcctgtccaacctaatcgattatcttacacatggcctaggggtatctgatactggtctagattgtgcgcaccgatgtctactcacatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335217|gb|CO979083.1|CO979083
EST:     CTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAG                         TCTGACAGCCAAAATCAATCATCATCAAGATCTGGTCCATGGAGGAAG
genomic: CTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGgtattcgagt ... gcatttgtagTCTGACAGCCAAAATCAATCATCATCAAGATCTGGTCCATGGAGGAAG