1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCGTTTACTAAGTTTGCACCAGCTTATTTTAAGTATTTATCTGAGTCAATCAGTACAGGAAGTCCAACTTGTCTTGCGAAGATCTTGGGGATTTATCAGgtactttttgttaattaagagttggcttgaatctttcttgtgaacaaccattgtttttcctagtgcaaatcattgatgtttttctgttctcattgggtgtggttttgtcttctccgtgaag
species | Glycine max |
transcript | GLYMA13G17510.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGATTTATCAG GTAACATCAAAGCACCTCAAAGGAGGGAAGGAAACAAAGATGGATGTTTTGEST: gi|192332689|gb|FK025346.1|FK025346
genomic: GGATTTATCAGgtactttttg ... ctccgtgaagGTAACATCAAAGCACCTCAAAGGAGGGAAGGAAACAAAGATGGATGTTTTG
EST: TCAGTACAGGAAGTCCAACTTGTCTTGCGAAGATCTTGGGGATTTATCAG GTAACATCAAAGCACCTCAAAGGAGGGAAGGAAACAAAGATGGATGTTTTGEST: gi|193479586|gb|FK443769.1|FK443769
genomic: TCAGTACAGGAAGTCCAACTTGTCTTGCGAAGATCTTGGGGATTTATCAGgtactttttg ... ctccgtgaagGTAACATCAAAGCACCTCAAAGGAGGGAAGGAAACAAAGATGGATGTTTTG
EST: TACAGGAAGTCCAACTTGTCTTGCGAAGATCTTGGGGATTTATCAG GTAACATCAAAGCACCTCAAAGGAGGGAAGGAAACAAAGATGGATGTTTTGEST: gi|18040859|gb|BM309153.1|BM309153
genomic: TACAGGAAGTCCAACTTGTCTTGCGAAGATCTTGGGGATTTATCAGgtactttttg ... ctccgtgaagGTAACATCAAAGCACCTCAAAGGAGGGAAGGAAACAAAGATGGATGTTTTG
EST: TCAGTACAGGAAGTCCAACTTGTCTTGCGAAGATCTTGGGGATTTATCAG GTAACATCAAAGCACCTCAAAGGAGGGAAGGAAACAAAGATGGATGTTTTG
genomic: TCAGTACAGGAAGTCCAACTTGTCTTGCGAAGATCTTGGGGATTTATCAGgtactttttg ... ctccgtgaagGTAACATCAAAGCACCTCAAAGGAGGGAAGGAAACAAAGATGGATGTTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGTTTACTAAGTTTGCACCAGCTTATTTTAAGTATTTATCTGAGTCAATCAGTACAGGAAGTCCAACTTGTCTTGCGAAGATCTTGGGGATTTATCAGgtactttttgttaattaagagttggcttgaatctttcttgtgaacaaccattgtttttcctagtgcaaatcattgatgtttttctgttctcattgggtgtggttttgtcttctccgtgaag
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