1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGTTGTGAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAGgtgaggagatgatatttgttattattagtagtataataaggacttcttttcttaagtgaaatatgctttaaaacttaattgttgaaaaatctttcctattcag
species | Glycine max |
transcript | GLYMA13G15140.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAG AGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCTTTTEST: gi|9204637|gb|BE330861.1|BE330861
genomic: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAGgtgaggagat ... tcctattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCTTTT
EST: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAG AGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCTTTTEST: gi|151393115|gb|EV262990.1|EV262990
genomic: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAGgtgaggagat ... tcctattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCTTTT
EST: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAG AGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTACTTTTEST: gi|193563489|gb|FK521378.1|FK521378
genomic: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAGgtgaggagat ... tcctattcagAGGAATGACATGGTTGAGTACTTTGGAGAGCAATTATCTGGCTTTGCTTTT
EST: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAG AGGAATGACATGGTTGAGTA
genomic: AGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAGgtgaggagat ... tcctattcagAGGAATGACATGGTTGAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGAAGATTATATCCATTTCATTAAGGAGGAAATTAACAATGTTGTGAAGCTCCAGGAAGAACTTGACATTGATGTCTTGGTGCATGGAGAGCCTGAGgtgaggagatgatatttgttattattagtagtataataaggacttcttttcttaagtgaaatatgctttaaaacttaattgttgaaaaatctttcctattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA