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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGAgtatgaactgctactcttttattgctcatcataccaaaacgtgttcttctgttttgctttgtttaagtttttaactgtatatttttttctggtgggatatag

Basic information

species Glycine max
transcript GLYMA13G10530.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G10530.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 5'ss of exon 10
GCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGAgtatg-aactgctactc----ttttattgctcatcataccaaaacgtgttcttctgttttgctttgtttaagtttttaactgtatatttttttctggtgggatatag
|| ||||||||  |||| |||||||||||  || |||||||||||||||||| || |||| |      | |   ||  || | |       | | |  || | |||   | |  ||  ||  ||   | |||  ||||||  |    ||     
GCATTGGATCGGTTGGGTCATGTGGATGAGGTTATTAATGATCCTGAgtatgtaattgcttcctaatgtgtctgtgtgcaccttgggtgtgcatatggttatatttcaatcttgttctgtggttgcttttat--tttttttagcccaga-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303877|gb|FG998229.1|FG998229
EST:     GCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGA                         CTACAAATTTGACTTCCCCACTCCAGATGATAGACCTGGTGCACCAATAAT
genomic: GCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGAgtatgaactg ... tgggatatagCTACAAATTTGACTTCCCCACTCCAGATGATAGACCTGGTGCACCAATAAT
EST: gi|208061301|gb|GD857993.1|GD857993
EST:     GCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGA                         CTACAAATTTGACTTCCCCACTCCAGATGATAGACCTGGTGCACCAATAAT
genomic: GCTTTGGATCGAATGGGCCATGTGGATGAAATTGTTAATGATCCTGAgtatgaactg ... tgggatatagCTACAAATTTGACTTCCCCACTCCAGATGATAGACCTGGTGCACCAATAAT