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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGgtatatttttcattcttattttttttttatgtttttgacatgcctttgcagtttatattggatatttgctagctcattatcctatcttatagcctagttt...

Basic information

species Glycine max
transcript GLYMA13G09970.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G09970.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G309547_T01 (Zea mays), 5'ss of exon 1
CTTGCCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGgtatattt-ttcattcttattttttttttatgt--ttttgacatgcctttgcagtttatattggatatttgctagctcattatcctatcttatagc-ctagttt-------------------------------------------------------------------------
|||||||| |  ||||||  |  | ||||| || |   | |||  ||||  |||||||||||||||||||||||| |||||||| |     || ||  |||||| ||  |  ||||   || | || |   ||  |||| | ||      |||  |||| ||     |   || |    || |   | ||| |  | || |                                                                            
CTTGCCATTTAATTCTACTAAGGAAGAACTCGCGACACTATTTCAGAAACATGGTAGTTTGGATAAAATAATTCTACCTCCAACGAGAGTGTTTGCCTTGgtatgttagtatattccacttgtgttatccagttgtttttatatattgcagcaacttatgtttttactgcacttgactttttttaaaacttctgtcacttgccatcttgagtgtctaaattgcacaaatattgccacttgaggttatttatcttgaattacattttttgtgtgtcag

upper sequence: GLYMA13G09970.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G031529_T01 (Zea mays), 5'ss of exon 7
CTTGCCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGgtatattt-ttcattcttattttttttttatgt--ttttgacatgcctttgcagtttatattggatatttgctagctcattatcctatcttatagc-ctagttt-------------------------------------------------------------------------
|||||||| |  |||||| ||  | ||||| || |   |||||  ||||  |||||||||||||||||| ||||| |||||||| |     || ||  |||||| ||  |  ||||   || | || |   |   |||| | ||      |||  |||| ||     |   || |    || |   | ||| |  | || |                                                                            
CTTGCCATTTAATTCTACTGAGGAAGAACTCGCGACACTGTTTCAGAAACATGGTAGTTTGGATAAAATCATTCTACCTCCAACGAGAGTGTTTGCCTTGgtatgttagtatattccacttgtgttatccagctgtttttatatattgcagcaacttatgtttttactgcacttgacttttttttaaacttctgtcacttgccatcttgagtgtctaaattgcacaaatattgccacttgagcttatttatcttgaattacattttttgtgtgtcag

upper sequence: GLYMA13G09970.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv01s0011g01060.t01 (Vitis vinifera), 5'ss of exon 8
CTTGCCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGgtatatttttcattcttattttttttttatgtttttgacatgcctttgcagtttatattggatatttgctagctc--attatcctatcttatagcctagttt
|||||| ||||||||  | |||  |||||| || || ||||||||||||| ||| |||||||| ||||| ||||| ||||| ||||| ||||| ||  |||||||| |||  |  ||||  | ||    | | ||  | | |  |||  |    || | || | ||    || ||  ||| |   ||||| |  | |     
CTTGCCTTATGGTTCATCTGAAGGTGAACTAGCTAAAATGTTTGGGAAATATGGGAGTTTGGACAAAATTATTCTTCCTCCGACAAAAACATTAGCCTTGgtatatgtttattctttataatcttgagttatattgcataaggttttatatgccat-taggtttttaatgagttccaattcttgaatcttttttcttgaac-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254313854|gb|GR831483.1|GR831483
EST:     TTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTG                         GTTGTTTTCCTCGAACCAGTGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCT
genomic: TTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGgtatattttt ... gatatttcagGTTGTTTTCCTCGAACCAGTGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCT
EST: gi|193549994|gb|FK505953.1|FK505953
EST:     TTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTG                         GTTGTTTTCCTCGAACCAGTGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCT
genomic: TTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGgtatattttt ... gatatttcagGTTGTTTTCCTCGAACCAGTGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCT
EST: gi|10709774|gb|BF009498.1|BF009498
EST:     TTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTG                         GTTGTTTTCCTCGAACCAGTGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCT
genomic: TTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGgtatattttt ... gatatttcagGTTGTTTTCCTCGAACCAGTGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCT