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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGTTGTTGGACACCACAGCACAGGGTATATGGATTATCAAGGGGTAGGAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtttttacttcatagctgttttcatattggacctgattcaataacaagctttttttttcctgcttagtgtatttaatttatactactatcacc...

Basic information

species Glycine max
transcript GLYMA13G05700.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G01090.2 (Arabidopsis thaliana), 5'ss of exon 9
TCCAGTTGTTGGACACCACAGCACAGGGTATATGGATTATCAAGGGGTAGGAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtttttacttcatagctgttttcatattggacctgattcaataacaagctttttttttcctgcttagtgtatttaatttatactactatcacc
| ||  |||| | || |      ||||    ||||| |||||||| || ||  || |    || | ||||||||||||||||||||| ||||| ||||||||   |   ||||         |||| || ||  |  |     ||||          | | | |   |  | | ||||   | || ||   ||       
TTCACCTGTTAGCCATCGGCTTCCAGGACTGATGGAATATCAAGGAGTTGGCTTGAGATCTCAATACCCTGTTGAGAGAAAATGGGCTCTTGGACTTCAGgttttgatatttt---------ctgtatttatggtataaagacttcagcttttgatatatatgtgattaat-attgtaacaatttgatcgcacag-----

upper sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv14s0108g01230.t01 (Vitis vinifera), 5'ss of exon 9
TCCAGTTGTTGGACACCACAGCACAGGGTATATGGATTATCAAGGGGTAGGAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtttttacttcatagctgttttcatattggacctgattcaa--taacaagctttttttttcctgcttagtgtatttaatttatactactatcacc
|  || |||||| || |      |||| ||| |||||||||||||  | ||  |  |    |||||||| | |||||| |||||||| ||||||||||||||       |  |  ||      |||| |||| |      || |   |  |   ||||     |    | |||  |||       |  ||      |||| |
TGGAGCTGTTGGGCAGCGGTTTCCAGGATATGTGGATTATCAAGGAATGGGTTTAAGAACCCAGTTCCCAGCTGAGAGGAAATGGGCTCTTGGGCTTCAGgttagactctagtgattttatcttgttctcatgtgacttatggtatgaggtggaaagccaaaatgcggcagct--gtgagacagttcaatgtagggatcaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208047764|gb|GD843965.1|GD843965
EST:     GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTCCAG                         TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: gi|8403580|gb|BE059214.1|BE059214
EST:     GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAG                         TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: gi|208218482|gb|GE020490.1|GE020490
EST:     GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAG                         TCTCGAAGACCCAACCACGTGAAAT
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGA-G-CCCAACCACGTGAAAT
EST: gi|193534371|gb|FK493390.1|FK493390
EST:     CCTGTTGAGAGAAAATGGGCCC-TGGGCTTCAG                         TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
genomic: CCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: gi|208194268|gb|GD992437.1|GD992437
EST:     GGGCCCTTGGGCTTCAG                         TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
genomic: GGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: gi|22540977|gb|BU090820.1|BU090820
EST:     GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAG                         TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: gi|7234476|gb|AW569813.1|AW569813
EST:     GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAG                         TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: gi|208219813|gb|GE018937.1|GE018937
EST:     GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAG                         TCTCGAGCCCAACCACGTGAAAT
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAAT